Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1180
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 576 SCICQLQAVSP*RAPCDLELEA*GPSLRRVRLPRKRAP 463
           SC   LQ     R  C +E+E+ G ++R +R      P
Sbjct: 137 SCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGP 174



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 607 HVLAPGQPVKKLYLSAPS 554
           H++ PG+ + KLY   PS
Sbjct: 385 HLIHPGKDINKLYGMTPS 402


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 607 HVLAPGQPVKKLYLSAPS 554
           H++ PG+ + KLY   PS
Sbjct: 385 HLIHPGKDINKLYGMTPS 402



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 576 SCICQLQAVSP*RAPCDLELEA*GPSLRRVR 484
           SC   LQ     R  C +E+E+ G ++R +R
Sbjct: 137 SCPMNLQYFPMDRQLCHIEIESFGYTMRDIR 167


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 576 SCICQLQAVSP*RAPCDLELEA*GPSLRRVRLPRKRAP 463
           SC   LQ     R  C +E+E+ G ++R +R      P
Sbjct: 76  SCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGP 113



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 607 HVLAPGQPVKKLYLSAPS 554
           H++ PG+ + KLY   PS
Sbjct: 323 HLIHPGKDINKLYGMTPS 340


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 122 VPGSRSGVQENFQLRW 169
           +PGS S V  N++L W
Sbjct: 556 IPGSNSAVFTNYKLYW 571


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 672 HRAGNAPSPPRTVPHHLAGSMYMSWHPDSQ 583
           H  GNA        H  AG  +++W+ D +
Sbjct: 343 HLGGNAEFRCEVSTHPQAGPHFITWYKDGR 372


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 672 HRAGNAPSPPRTVPHHLAGSMYMSWHPDSQ 583
           H  GNA        H  AG  +++W+ D +
Sbjct: 343 HLGGNAEFRCEVSTHPQAGPHFITWYKDGR 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,555
Number of Sequences: 438
Number of extensions: 4925
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)