Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1172
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.4  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 579 NNAIWCKFRLNERDRYIY 632
           N A+W +F +NE+  Y+Y
Sbjct: 124 NTAVWARFNVNEQ-MYLY 140


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 579 NNAIWCKFRLNERDRYIY 632
           N A+W +F +NE+  Y+Y
Sbjct: 124 NTAVWARFNVNEQ-MYLY 140


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 435 RVVRQRL*NA-VHCVSRSRAVVMSI 364
           RV+R +L    VHC+  ++AVV+S+
Sbjct: 76  RVIRAKLGKVGVHCMKTTQAVVVSL 100


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 498 IDRGNEYKKEIHICFVMII 554
           I+ G E  +E H+CF  ++
Sbjct: 380 INNGAELMQETHVCFFSLL 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,563
Number of Sequences: 438
Number of extensions: 2965
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)