Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1171
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.   194   4e-52
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.   171   5e-45
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   6.0  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.0  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score =  194 bits (474), Expect = 4e-52
 Identities = 97/156 (62%), Positives = 109/156 (69%)
 Frame = +3

Query: 66  MVDAATLEKLEAGFSKLQGSDSKSLLKKYLTRXSIRQPEEQKDLIRIHPP*LHPIGCXXX 245
           MVD A L+KLE GFSKL  SDSKSLLKKYL++    Q + +K             G    
Sbjct: 1   MVDQAVLDKLETGFSKLSSSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENL 60

Query: 246 XXXXXXXXXXXXXXXXFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGEFVV 425
                           FA+LFDPIIEDYH GFKKTDKHPPK++GDVD+LGNLDPA EF+V
Sbjct: 61  DSGVGIYAPDAEAYTLFADLFDPIIEDYHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIV 120

Query: 426 STRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLS 533
           STRVRCGRSLEGYPFNPCLTE+QYKEME+KVS TLS
Sbjct: 121 STRVRCGRSLEGYPFNPCLTEAQYKEMEEKVSSTLS 156



 Score = 81.0 bits (191), Expect = 7e-18
 Identities = 36/43 (83%), Positives = 40/43 (93%)
 Frame = +1

Query: 166 VFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSV 294
           VFD LK KKTSF STLLDCIQSG+ENLDSGVGIYAPDAE+Y++
Sbjct: 34  VFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEAYTL 76


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score =  171 bits (415), Expect = 5e-45
 Identities = 85/140 (60%), Positives = 96/140 (68%)
 Frame = +3

Query: 114 LQGSDSKSLLKKYLTRXSIRQPEEQKDLIRIHPP*LHPIGCXXXXXXXXXXXXXXXXXXX 293
           L  SDSKSLLKKYL++    Q + +K             G                    
Sbjct: 1   LSSSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEAYTL 60

Query: 294 FAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFN 473
           FA+LFDPIIEDYH GFKKTDKHPPK++GDVD+LGNLDPA EF+VSTRVRCGRSLEGYPFN
Sbjct: 61  FADLFDPIIEDYHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYPFN 120

Query: 474 PCLTESQYKEMEDKVSGTLS 533
           PCLTE+QYKEME+KVS TLS
Sbjct: 121 PCLTEAQYKEMEEKVSSTLS 140



 Score = 81.0 bits (191), Expect = 7e-18
 Identities = 36/43 (83%), Positives = 40/43 (93%)
 Frame = +1

Query: 166 VFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSV 294
           VFD LK KKTSF STLLDCIQSG+ENLDSGVGIYAPDAE+Y++
Sbjct: 18  VFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEAYTL 60


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 43 QVPEKPQQWSTPQPSR 90
          Q P+ PQ+ S P PS+
Sbjct: 29 QSPQAPQRGSPPNPSQ 44


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 350 GLLEAIVVVLDDRVKQLGETE 288
           GL+EA ++ L +R K+ G+T+
Sbjct: 104 GLMEASLIGLVERHKKRGQTK 124


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 350 GLLEAIVVVLDDRVKQLGETE 288
           GL+EA ++ L +R K+ G+T+
Sbjct: 104 GLMEASLIGLVERHKKRGQTK 124


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 317 HRGLPQWLQEDRQAPAQEL 373
           H G   W QED  A  + L
Sbjct: 405 HHGSKSWTQEDMDAALEAL 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,505
Number of Sequences: 438
Number of extensions: 2549
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)