Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1160
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.8  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 506 GPAHGDELAYIF-EPLDNEGKSMSGAVSDSDAKVRDNFVDLISKFAH 643
           G  HGDE+ Y+F  PL+   KS+  +  + D  +R   +   S+FA+
Sbjct: 493 GVLHGDEVEYVFGHPLN---KSLKYSDKERDLSLR--MILYFSEFAY 534


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 259 LWIGLQYNFKRSRWSISN 312
           LW+ L++N    RW++S+
Sbjct: 74  LWLKLEWNDVNMRWNVSD 91


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 489 YTFISFELSVRASPGRKY 436
           Y F+ F    R+  GRKY
Sbjct: 476 YAFVPFSAGPRSCVGRKY 493


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 351 RTRVFASGAQGVPLIYIA 404
           R+   AS A G PL Y+A
Sbjct: 132 RSSALASKATGYPLAYVA 149


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +2

Query: 218 AVVGSILPISLTDYYGSVFNTTLNAVDGLSQIVEATGDALFNFPAYQS 361
           A+V  I P S  D  G            +  I +   DAL+  P Y+S
Sbjct: 30  ALVYQIYPRSFQDSDGDGIGDLNGITARMDHIADIGADALWLSPIYKS 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,039
Number of Sequences: 438
Number of extensions: 3929
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)