Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1152
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.13 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 30   SPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVESPRALKSMPGA 179
            +P T +   P  IP+     HEN   T N+      P     ++K+ PG+
Sbjct: 851  TPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGS 900


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -3

Query: 682 RPHRETACNKCRFPSSVLMVSVHNFAGAL*ISSKPFHASLVALTQSCANSPYLHVK 515
           RPH+ T C+K    S  L++ +    G      KP+         +C+    +H +
Sbjct: 174 RPHKCTVCSKTFIQSGQLVIHMRTHTG-----EKPYVCKACGKGFTCSKQLKVHTR 224


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 243 ISC*VLSKHSRWISI 199
           ++C VLS  S+W+SI
Sbjct: 62  VTCDVLSWQSKWLSI 76


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 537 IPRTSTLKC*AALRDQYSLVRLKLKFHRERETVISTLKQ 421
           +P T  L   A +    S + L L+  ++RET+IS  ++
Sbjct: 822 VPSTKVL---AMISSVKSFMELSLRSVKDRETIISAAEK 857


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 87  LHENMSNTWNEFVSEYDP 140
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 276 SDHQWLCFCHSISC*VLSKHSRWISITDRRRGT 178
           SD+Q   FC+ +SC   + H   I    RRR +
Sbjct: 352 SDYQD-AFCNIVSCSPQTVHPETIIDVSRRRSS 383


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 87  LHENMSNTWNEFVSEYDP 140
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 87  LHENMSNTWNEFVSEYDP 140
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,390
Number of Sequences: 438
Number of extensions: 3840
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)