Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1147
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.5  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   7.3  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   7.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 41  HGLRRPTLVPNSC 3
           HG+   T++PNSC
Sbjct: 87  HGVLNATVLPNSC 99


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 41  HGLRRPTLVPNSC 3
           HG+   T++PNSC
Sbjct: 87  HGVLNATVLPNSC 99


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 119 QARFILTAQPRCRSGSGHLYN 181
           + R+I+   PRC  GS  + N
Sbjct: 50  EPRYIIDVPPRCPPGSKFIKN 70


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 119 QARFILTAQPRCRSGSGHLYN 181
           + R+I+   PRC  GS  + N
Sbjct: 50  EPRYIIDVPPRCPPGSKFIKN 70


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 102 LQPTRDRLVSFLPLSHVAAQV 164
           LQ  RDRL + +   HVA Q+
Sbjct: 330 LQKERDRLTAMMHHLHVAKQM 350


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/41 (19%), Positives = 21/41 (51%)
 Frame = +3

Query: 552 LSLDIPLVDAFGMSEAAGAHTLSIYPKFSLDSAGEILEGTE 674
           +S D P+ +  G S+    + +  YP++   +   +++ +E
Sbjct: 437 ISWDAPITEIGGDSDLVERYEVRCYPRYDDATNATVIQTSE 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,512
Number of Sequences: 438
Number of extensions: 5439
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)