Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1145
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...   225   6e-60
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   2.6  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   4.5  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   4.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   7.9  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
            Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score =  225 bits (549), Expect = 6e-60
 Identities = 111/207 (53%), Positives = 143/207 (69%)
 Frame = +3

Query: 3    LLAESYNPHVRYGAAMALGIACAGTGNRDAIGLLEPMVKFDPVNFVRQGALIASAMILIQ 182
            LL +SYNPHVRYG+A+ALGIACA +G+  A+ LL  +V+ D  +FVRQGA+IA AMIL Q
Sbjct: 622  LLVDSYNPHVRYGSAIALGIACANSGSNAALDLLSRLVE-DATDFVRQGAMIAQAMILTQ 680

Query: 183  QTEALCPKVTYFRQLYAQVISNKHEDVMAKFGAILAQGIIDAGGRNVTVSLQNRTGHMNM 362
              + L  KV+  R+ + QVI+ KHED +AK GA LAQGIIDAGGRNVT++LQ  TG + +
Sbjct: 681  HNDQLNSKVSGIRKHFEQVINEKHEDALAKLGATLAQGIIDAGGRNVTIALQTATGSLKL 740

Query: 363  LAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYAYPAPL 542
             A+VG+ VF QYWYWFPL H +SL+F+PT +I L+ +L  P+    SN +P L+AYP   
Sbjct: 741  SAIVGLTVFLQYWYWFPLTHFMSLSFSPTALIGLDKNLNAPKFSFISNVRPKLFAYPPKS 800

Query: 543  XXXXXXXXXXVTTAVLSIAAAKARRRA 623
                      V TAVLS    KA+ RA
Sbjct: 801  VQPTAKTVQKVETAVLS-TTVKAQARA 826


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 146 LPHKVNRIEFNHWFQESNGI 87
           L H++++ +FN WF   NG+
Sbjct: 71  LRHRLSKSQFNEWFLSHNGV 90


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 417 AHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSL 521
           AHC ++      +I L+S   +   E++ NSKP+L
Sbjct: 105 AHCQNMCLYGDELIVLSSKKNLEIYEIQKNSKPNL 139


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 12  ESYNPHVRYGAAMALGIACAGTGNRDAIGLLEPMV 116
           E+ +  +R  A + LG+A +G    D + +L P+V
Sbjct: 470 ETGSVKLRASAILGLGLAYSGANREDLLDMLSPIV 504


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 144  ASQS*QDRI*PLVPRVQWHHDSQYQRRQYPEPWRRRNE 31
            A QS  +R+  L+P V    D Q + +Q  E WR+  +
Sbjct: 1350 AVQSQNNRLSTLIPLVNSDVDIQQEVKQQLEEWRKHGD 1387


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 50  GSGYCLRWYWES*CHWTLGTNG 115
           G+G C R  WE   H T G  G
Sbjct: 501 GNGECFRMAWEKEAHMTCGLCG 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,814
Number of Sequences: 5004
Number of extensions: 51850
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)