Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1144
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   103   2e-23
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    28   1.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   5.6  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  103 bits (248), Expect = 2e-23
 Identities = 60/155 (38%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
 Frame = +2

Query: 119 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 292
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 293 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 472
           NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L GISS
Sbjct: 105 NNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISS 164

Query: 473 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 577
                              S  Q+PLF  A+ IT+
Sbjct: 165 TLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITS 199



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 18/31 (58%), Positives = 26/31 (83%)
 Frame = +1

Query: 574 SIFIIISLPVLAGAITILLTDRNLNTSFFDP 666
           SI ++++LPVLAG + +L +DRNLNTSF+ P
Sbjct: 199 SILLLLTLPVLAGGLFMLFSDRNLNTSFYAP 229


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 570 LQHFYYYITTCFSWSYY 620
           LQ+ YY +  CFS+SYY
Sbjct: 215 LQNLYYDLLLCFSYSYY 231


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 540 NYPYLYEL*GLQHFYYYITTCFSW 611
           NYPY +E      +YYYI + FSW
Sbjct: 268 NYPY-HEA---YEYYYYIRSSFSW 287


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 310 TPTPLPYIINFKKNCRKWCRNRMNS 384
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,007
Number of Sequences: 5004
Number of extensions: 34441
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)