Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1141
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    35   0.013
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    29   0.50 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   3.5  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   4.7  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   8.1  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   8.1  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +3

Query: 522 ARNSVAFVYGLIRKSSH-RSGSTRTVTGACGRYHRYWIGR-IRNNVNHELSIHRVLKDTI 695
           AR  +  VY +I+++ + RS + R  +  CGR  R W  R I+NN + +    R +++T+
Sbjct: 631 ARKEIPRVYKIIQQNQYNRSTNARKTSQLCGREARRWQFRTIKNNKDMQTKAKRAMRETM 690


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 175 DALKQSLLFIFIEHGYLSAEAENFKENPSTTEDT 276
           D+LKQSL FI ++   L     + KE PST ++T
Sbjct: 543 DSLKQSLSFINLDASALKDREPSEKELPSTAKET 576


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 24  LRQMPSWFFLKFEKGLVWLYFSIL 95
           L + PSW+    E GLV LY  ++
Sbjct: 46  LNEAPSWYKYSLESGLVCLYLYLI 69


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 242 ISKKIQAPLKILSCKTFYYFLDINHASKYAGQSVNTAFLSTCADSLERLLQLRPS 406
           I+ K       +S  T  +F D    SK++  +VNTA  S  +D++ER    +PS
Sbjct: 273 INLKDDESFSFISRLTSVHFCDRQIFSKFS--AVNTASTSKTSDTIERASFSKPS 325


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 316 RFKICRTVS*YGVSFYV 366
           +F +CRTV+  G+S YV
Sbjct: 104 KFHVCRTVALLGISLYV 120


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 371 DSLERLLQLRPSM*VSSRGSNRSVANTGPSKSSA 472
           DS   L  L+ +  ++S+GSN S  N+G S SS+
Sbjct: 287 DSKPNLSTLQDNASLTSQGSNLSSQNSGLSSSSS 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,401
Number of Sequences: 5004
Number of extensions: 51563
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)