Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1138
(704 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46940-4|CAA87067.1| 138|Homo sapiens transition protein 2 prot... 31 4.0
X63759-1|CAA45291.1| 138|Homo sapiens transition protein 2 prot... 31 4.0
X63758-1|CAA45290.1| 138|Homo sapiens transition protein 2 prot... 31 4.0
U15422-3|AAC50488.1| 138|Homo sapiens transition protein 2 prot... 31 4.0
L03378-1|AAA61203.1| 138|Homo sapiens transition protein 2 prot... 31 4.0
BC096135-1|AAH96135.1| 138|Homo sapiens transition protein 2 (d... 31 4.0
AF215715-1|AAF35854.1| 133|Homo sapiens transitional protein 2 ... 31 4.0
AB281701-1|BAF36710.1| 138|Homo sapiens transition protein 2 pr... 31 4.0
>Z46940-4|CAA87067.1| 138|Homo sapiens transition protein 2
protein.
Length = 138
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 TFSQSCGQNGKQSTS-PKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRH 450
TFSQSC Q+ + S S ++ S R+ GA H+S S N S K + H
Sbjct: 32 TFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQ-SPNTSPPPKRHKKTMNSHH 90
Query: 451 SPL 459
SP+
Sbjct: 91 SPM 93
>X63759-1|CAA45291.1| 138|Homo sapiens transition protein 2
protein.
Length = 138
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 TFSQSCGQNGKQSTS-PKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRH 450
TFSQSC Q+ + S S ++ S R+ GA H+S S N S K + H
Sbjct: 32 TFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQ-SPNTSPPPKRHKKTMNSHH 90
Query: 451 SPL 459
SP+
Sbjct: 91 SPM 93
>X63758-1|CAA45290.1| 138|Homo sapiens transition protein 2
protein.
Length = 138
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 TFSQSCGQNGKQSTS-PKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRH 450
TFSQSC Q+ + S S ++ S R+ GA H+S S N S K + H
Sbjct: 32 TFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQ-SPNTSPPPKRHKKTMNSHH 90
Query: 451 SPL 459
SP+
Sbjct: 91 SPM 93
>U15422-3|AAC50488.1| 138|Homo sapiens transition protein 2
protein.
Length = 138
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 TFSQSCGQNGKQSTS-PKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRH 450
TFSQSC Q+ + S S ++ S R+ GA H+S S N S K + H
Sbjct: 32 TFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQ-SPNTSPPPKRHKKTMNSHH 90
Query: 451 SPL 459
SP+
Sbjct: 91 SPM 93
>L03378-1|AAA61203.1| 138|Homo sapiens transition protein 2
protein.
Length = 138
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 TFSQSCGQNGKQSTS-PKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRH 450
TFSQSC Q+ + S S ++ S R+ GA H+S S N S K + H
Sbjct: 32 TFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQ-SPNTSPPPKRHKKTMNSHH 90
Query: 451 SPL 459
SP+
Sbjct: 91 SPM 93
>BC096135-1|AAH96135.1| 138|Homo sapiens transition protein 2
(during histone to protamine replacement) protein.
Length = 138
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 TFSQSCGQNGKQSTS-PKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRH 450
TFSQSC Q+ + S S ++ S R+ GA H+S S N S K + H
Sbjct: 32 TFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQ-SPNTSPPPKRHKKTMNSHH 90
Query: 451 SPL 459
SP+
Sbjct: 91 SPM 93
>AF215715-1|AAF35854.1| 133|Homo sapiens transitional protein 2
protein.
Length = 133
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 TFSQSCGQNGKQSTS-PKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRH 450
TFSQSC Q+ + S S ++ S R+ GA H+S S N S K + H
Sbjct: 32 TFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQ-SPNTSPPPKRHKKTMNSHH 90
Query: 451 SPL 459
SP+
Sbjct: 91 SPM 93
>AB281701-1|BAF36710.1| 138|Homo sapiens transition protein 2
protein.
Length = 138
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 274 TFSQSCGQNGKQSTS-PKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRH 450
TFSQSC Q+ + S S ++ S R+ GA H+S S N S K + H
Sbjct: 32 TFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQ-SPNTSPPPKRHKKTMNSHH 90
Query: 451 SPL 459
SP+
Sbjct: 91 SPM 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,142,418
Number of Sequences: 237096
Number of extensions: 1870235
Number of successful extensions: 4928
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4924
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -