Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1135
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   0.68 
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   1.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.7  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   4.8  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    25   6.3  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 329 NSRPKLAKSVQPFSSFSKTNEQQFIF 252
           N+ P+L +S++P+ S  K + Q+FIF
Sbjct: 917 NAFPQLVRSLKPYISVLKQDHQEFIF 942


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 268 NSNSFLYIEIPAN*LYSSHYKYRETL 191
           N+NS   ++IP   LYS H  YRE +
Sbjct: 14  NTNSTEIVQIPYGQLYSVHENYRECM 39


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 155 PSAFACFLKLVNRYXKYEAAXEIAVSIQ*TKS 60
           PS   CF   +N Y  Y+A+  + + IQ +KS
Sbjct: 602 PSYSGCFQGPINDYMTYKASTALTLEIQDSKS 633


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +1

Query: 208 YNVMNKVNLLESLCIKMNCCSLVLLKLENGWTDLANFGLELFVEV 342
           +NV+++  +L  + +K++C S  L  + +   D+    LEL +E+
Sbjct: 128 FNVLSEYPILIPIFLKLDCVSTFLELMNHENADITITVLELLIEL 172


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 349 FSELPQIIQDQN*PNRSSRSRVLARLTNSNSF 254
           +S++PQ  Q    PN +  SR+   L+NS  F
Sbjct: 381 YSDIPQQFQCDYVPNVAKESRINVALSNSFGF 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,438
Number of Sequences: 5004
Number of extensions: 45503
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)