Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1135
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    29   3.7  
08_02_0505 + 17897038-17898870,17899049-17899108,17900034-179001...    29   3.7  
02_01_0230 - 1532648-1532768,1533359-1533476,1533540-1533593,153...    29   3.7  

>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 515 DFVVPQSINKKPKLLYKINLKQTKGIRPMGDTSKGKHYCYFYLIPSIFIFVYIL 354
           DF++P  +   P +L  +++    G      T   K   Y YL P + I   IL
Sbjct: 310 DFLLPTVVGCLPMILQNVSIVSLAGAAVASTTGSEKSRIYSYLFPVLGIMSSIL 363


>08_02_0505 +
           17897038-17898870,17899049-17899108,17900034-17900150,
           17900352-17900389,17900446-17900641
          Length = 747

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 160 SDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITFYYHCN 20
           S+  +LL+  S  T  ++M+   K  FRY+  ++R+K +I F+Y  N
Sbjct: 672 SEDAKLLILGSRTT--QHMQGIKKSSFRYDAFDIRIKFMIIFHYIVN 716


>02_01_0230 -
           1532648-1532768,1533359-1533476,1533540-1533593,
           1533788-1533880,1533960-1534152,1534361-1534461,
           1534561-1534600,1534683-1534730,1535341-1535523,
           1535623-1535688
          Length = 338

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 575 LLLDENKFPTYFYSKLADPADFVVPQSINKKPKLLYKINLKQTKG 441
           L++ EN +P +FY KLA+ +   +P    K   + Y  N K  KG
Sbjct: 254 LMMFENNYPPFFYPKLAELSKTFLP----KLETVYYIHNFKGLKG 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,578
Number of Sequences: 37544
Number of extensions: 234668
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)