Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1135
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    27   0.14 
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    27   0.14 
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    27   0.14 
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    27   0.14 
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    27   0.14 
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    27   0.14 
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    27   0.14 
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    27   0.14 
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    27   0.14 
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    27   0.14 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    26   0.32 
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    25   0.56 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.0  

>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 109

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 110 YYNINY 115


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 109

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 110 YYNINY 115


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 109

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 110 YYNINY 115


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 109

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 110 YYNINY 115


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 109

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 110 YYNINY 115


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 109

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 110 YYNINY 115


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 109

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 110 YYNINY 115


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 109

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 110 YYNINY 115


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 291 KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 342

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 343 YYNINY 348


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   +SL+   N          YN+ N         
Sbjct: 291 KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYN---NYNKHNYN-----KL 342

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 343 YYNINY 348


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRN 107
           KYRET K R+ N+T    S  P+++   +SL+   N
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNSLSNNYN 93


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 208 KYRETLKSRTXNKT--RGSDRPRLLVF*SSLTGTRNMRPXVKLLFRYNELNLRVK*VITF 35
           KYRET K R+ N+T    S  P+++   + L+   N          YN+ N         
Sbjct: 58  KYRETSKERSRNRTERERSKEPKIISNNNPLSNNYNYNNNYN---NYNKHNYN-----KL 109

Query: 34  YYHCNY 17
           YY+ NY
Sbjct: 110 YYNINY 115


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 404 YCYFYLIPSIFIFVYILNLL*TSTNNSRPKLAKSVQPFSSFSKTNEQ 264
           + + Y+IP IFI ++   LL +S  N    L +  +  +  S  + Q
Sbjct: 225 FIWAYVIPLIFIILFYSRLL-SSIRNHEKMLREQAKKMNVKSLVSNQ 270


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 404 YCYFYLIPSIFIFVYILNLL*TSTNNSRPKLAKSVQPFSSFSKTNEQ 264
           + + Y+IP IFI ++   LL +S  N    L +  +  +  S  + Q
Sbjct: 225 FIWAYVIPLIFIILFYSRLL-SSIRNHEKMLREQAKKMNVKSLVSNQ 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,031
Number of Sequences: 438
Number of extensions: 3533
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)