Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1130
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...   132   6e-32
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...   111   7e-26
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    58   2e-09
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    39   6e-04
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    33   0.038
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    28   1.4  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   1.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    27   3.3  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    26   4.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   5.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   5.8  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   7.7  

>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score =  132 bits (318), Expect = 6e-32
 Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 2/194 (1%)
 Frame = +2

Query: 107 TIAIHAGQEPEKWNSAAVVTPIVTSTTFKQPAPAEHTG-FEYGRSGNPTRNTLEECLAAL 283
           T  +H     +++++++V  PI  S TFKQP   EH G F+Y RSGNPTR+ L+  LA L
Sbjct: 11  TELVHVEGNEDQYHASSV--PIYQSATFKQPC-LEHMGKFDYTRSGNPTRSVLQVHLAKL 67

Query: 284 DGGKYGLTFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQVIARLGINTTFTDFT 463
              K+    ++                H+V+  D+YGG++RLL     + G      D +
Sbjct: 68  MKAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTS 127

Query: 464 NIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIARSRG-DIIVVVDNTFLTPYLQR 640
           ++   + A++ +T ++ IE+PTNP + + DI AIVKI RS+  D ++V+DNT L+P L  
Sbjct: 128 DLAAFEAALRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCN 187

Query: 641 PLDFGADIVMYSLT 682
           PLDFG DIV  S T
Sbjct: 188 PLDFGYDIVYESAT 201


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score =  111 bits (268), Expect = 7e-26
 Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 10/204 (4%)
 Frame = +2

Query: 101 FATIAIHAGQEPEKWNSAAVVTPIVTSTTFK--------QPAPAEHTGFEYGRSGNPTRN 256
           F T+ +HAGQEP+   S+  V PI  +T++         +    +  G+ Y R  NPT +
Sbjct: 8   FETLQLHAGQEPDAATSSRAV-PIYATTSYVFRDCDHGGRLFGLQEPGYIYSRMMNPTAD 66

Query: 257 TLEECLAALDGGKYGL-TFASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQVIARL 433
             E+ +AAL+ G   + T +               GD+IVS+  +YGGT  L +  + RL
Sbjct: 67  VFEKRIAALEHGAAAIATSSGTSALFMALTTLAKAGDNIVSTSYLYGGTYNLFKVTLPRL 126

Query: 434 GINTTFTDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIARSRGDIIVVVDN 613
           GI T F +  +   +   + ENTK +++E+  NP+  V D E I ++A + G + ++VDN
Sbjct: 127 GITTKFVNGDDPNDLAAQIDENTKAVYVESIGNPMYNVPDFERIAEVAHAAG-VPLMVDN 185

Query: 614 TFLTP-YLQRPLDFGADIVMYSLT 682
           TF    YL RP+D GADIV +S T
Sbjct: 186 TFGGGGYLVRPIDHGADIVTHSAT 209


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 36/98 (36%), Positives = 57/98 (58%)
 Frame = +2

Query: 389 YGGTNRLLRQVIARLGINTTFTDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIV 568
           Y GT +++ ++    G+ T+F     I+   +A+ E   +IW+ETP NPL    DI    
Sbjct: 121 YSGTIQIIARINRLTGLETSF-----IDGKCDAIGEGD-VIWLETPLNPLGIAFDIPFYK 174

Query: 569 KIARSRGDIIVVVDNTFLTPYLQRPLDFGADIVMYSLT 682
           ++A+ +G  I+VVD+TF  P +Q  L  GAD V++S T
Sbjct: 175 ELAKKKG-AILVVDSTFAPPPIQDALVLGADYVVHSAT 211


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = +2

Query: 464 NIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIAR--SRGDIIVVVDNTF 619
           ++ K++NA+ E TKMI I TP NPL K+   E + +IA    + +++VV D  +
Sbjct: 166 DMNKLRNAITEKTKMIVINTPHNPLGKIFSEEELNEIADLVLKHNLLVVSDEVY 219


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 24/63 (38%), Positives = 35/63 (55%)
 Frame = +2

Query: 494 ENTKMIWIETPTNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQRPLDFGADIVMY 673
           E    ++ E P+NPLL   D+  I K+A S  D  VVVD T +  ++   +   AD+V+ 
Sbjct: 366 EKVMALFCEFPSNPLLNSPDLVRIRKLADSY-DFAVVVDET-IGNFVNVEVLPLADVVVS 423

Query: 674 SLT 682
           SLT
Sbjct: 424 SLT 426


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 426 AITCLNSLFVPPYTSSED 373
           A TC N L +PPYTS +D
Sbjct: 732 AHTCFNRLDLPPYTSKKD 749


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 443 TTFTDFTNIEKVKNAMQENTKMIWIETPTNPLLKVV 550
           T + D  N EK    + +NT+   ++T  NPLL ++
Sbjct: 22  TIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLI 57


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 495  SCMAFFTFSIFVKSVNVVLIPNLAITCLNSLFVP 394
            +C  F  + + V ++ + L+P  +  CL  LF P
Sbjct: 1277 TCQTFGFWCVTVLTIALCLLPRFSYICLQKLFYP 1310


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 426 AITCLNSLFVPPYTSSED 373
           A TC N L +PPY S E+
Sbjct: 636 AHTCFNRLDIPPYNSKEE 653


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 383 DVYGGTNRLLRQVIARLGINTT 448
           DVY   NRL  QVIA +G + T
Sbjct: 144 DVYSADNRLAEQVIASVGDDCT 165


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 437 INTTF-TDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIARSRGD 592
           +N  F T F+ ++  K   Q+ TK IW+    N  + V+D+E      R RG+
Sbjct: 56  LNNLFGTSFSVMDASKR--QQTTKGIWLSKANNSPILVMDVEG--TDGRERGE 104


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 158 VVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEECLAALDGGKYGLTF 310
           V + ++  TTF Q  P+    +E     N T N L E   +L    YG  F
Sbjct: 479 VSSELLHMTTFTQSLPSGFKAYEIIPEPNVTGNALIELQESLHLDSYGFFF 529


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 126 AKNRKNGIQQPWLHPLSHPLHSNSQH 203
           +KN +N  Q P  +P  H +   SQH
Sbjct: 16  SKNSQNASQPPETYPFYHEVRQMSQH 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,693
Number of Sequences: 5004
Number of extensions: 61984
Number of successful extensions: 217
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)