Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1129
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   109   2e-25
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   0.74 
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    28   0.98 
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    27   2.3  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   2.3  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   3.0  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    26   4.0  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   9.1  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   9.1  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  109 bits (262), Expect = 2e-25
 Identities = 57/125 (45%), Positives = 82/125 (65%)
 Frame = -3

Query: 513 ILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEF 334
           IL    ++    ++YNKF S VS+      LYT K+I  +  L+AY+  D +V Q   EF
Sbjct: 177 ILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEF 235

Query: 333 SLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIIS 154
           + A+ +F A+ E  CSE SSR  AM+NASK+AG+MI+K ++ +NR RQA IT ELI+I++
Sbjct: 236 AFANAIFSAMAEAHCSEMSSRRNAMENASKSAGDMINKFSIQYNRQRQASITNELIDIVT 295

Query: 153 GAAAL 139
           GA +L
Sbjct: 296 GANSL 300


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = -3

Query: 513  ILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSY-TE 337
            IL +  +FGS KII  K   +V    S   L  + +I     L    +L +D+ QS+   
Sbjct: 2462 ILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIPQSFGNA 2521

Query: 336  FSLASLLFYALKEGACSEQSSRMTAM 259
             +L   L   ++    + Q SR  A+
Sbjct: 2522 KNLVEALKVNIEAPPSTSQDSRRLAL 2547


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 23/108 (21%), Positives = 45/108 (41%)
 Frame = -3

Query: 474 IYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEG 295
           I+N+FKS+ +  Q   P   +       +   + +   D L+S  E +++ L+    KE 
Sbjct: 71  IFNRFKSISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLI--PTKEE 128

Query: 294 ACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISG 151
           A    +  +       K  G    ++ L F+  R  V+  + + I +G
Sbjct: 129 AERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNG 176


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 304 QRVEQQRGQRELRVGLEHVAVQRVVRSQ 387
           +R+EQ+R Q+E  + L+    QR++RS+
Sbjct: 105 ERLEQERRQKEEAIALQKQQQQRLLRSK 132


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
 Frame = -3

Query: 420 YTKKSIES-ASKLTAYDSL--DSDVLQSYT--EFSLASLLFYALKEGACSEQSSRMTAMD 256
           YT K+ E  A  L+  +++  ++++L  +T  E +LAS +++ +  GA   +   ++A  
Sbjct: 100 YTAKTKEDFAYLLSQLETIFKENEILNEFTPVEVALASDIYFCVLNGAPVREYPLLSAWY 159

Query: 255 NASKNAGEMIDKLTLTFNRT--RQAVITRELIEI 160
              +     +  L LTF +T  + AV + E I +
Sbjct: 160 LKIEKQKPFVQALKLTFEKTLGQPAVTSTEKIPV 193


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 366 DSDVLQSYTEFSLASLLFYALKEGACSEQ 280
           D D+ Q Y   ++ASLL ++L +  CS Q
Sbjct: 146 DQDMRQLYMATTIASLLDFSLSDPLCSIQ 174


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 22/88 (25%), Positives = 44/88 (50%)
 Frame = -3

Query: 501 GYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLAS 322
           G +  +  I +++F+  V  ++S  P  TKK    ASK +  D+L  + ++   E +  +
Sbjct: 257 GIKKANADIDFDEFEKAVLSSES-AP--TKKPAAVASKESTVDTLVDNGVEEVKESTSTT 313

Query: 321 LLFYALKEGACSEQSSRMTAMDNASKNA 238
           +    +K    S  S++ T  D+++ NA
Sbjct: 314 VQGKPVKPVLKSAASAKSTKSDDSNLNA 341


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = -3

Query: 375 DSLDSDVLQSYTEFSLASLLFYAL 304
           +S   ++LQ+ ++F+L +L+F+A+
Sbjct: 2   NSYKEEILQTKSDFTLKNLIFFAI 25


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 303 KEGACSEQSSRMTAMDNASKNAGEMIDKLTLT 208
           K+G C +  S +  + N+ K+ GE  D+L LT
Sbjct: 88  KDGRCKKVESMLPQLLNSEKSVGE--DRLGLT 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,344
Number of Sequences: 5004
Number of extensions: 25252
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)