Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1129
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...   112   1e-25
07_03_0571 - 19602755-19603831                                         61   6e-10
07_01_0696 - 5261008-5263128                                           29   3.0  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score =  112 bits (270), Expect = 1e-25
 Identities = 58/130 (44%), Positives = 89/130 (68%), Gaps = 10/130 (7%)
 Frame = -3

Query: 495 EFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDS----------DVLQS 346
           E+ + ++++NKF SV+S+  +   + + + +E  S+      LDS          ++LQ+
Sbjct: 238 EYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEILQN 297

Query: 345 YTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELI 166
            TEF  + +++ A  E ACSE  +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELI
Sbjct: 298 LTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELI 357

Query: 165 EIISGAAALD 136
           EIISGA+AL+
Sbjct: 358 EIISGASALE 367


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 32/85 (37%), Positives = 52/85 (61%)
 Frame = -3

Query: 393 SKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLT 214
           S +  ++     +L +     L S +  AL+E   SE ++RM+AM +A+ NA E+   L+
Sbjct: 273 SPVVQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNAIELRKNLS 332

Query: 213 LTFNRTRQAVITRELIEIISGAAAL 139
           + +NR RQA IT E++EI++GA AL
Sbjct: 333 MVYNRQRQAKITGEILEIVAGADAL 357


>07_01_0696 - 5261008-5263128
          Length = 706

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 372 SLDSDVLQSYTEFSLASLLFYALKEGAC 289
           S+D D LQS+     AS LF +L +G+C
Sbjct: 429 SIDEDELQSFVPEFAASNLFVSLPQGSC 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,046,715
Number of Sequences: 37544
Number of extensions: 179458
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)