Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1128
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 149 3e-37
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 100 3e-22
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 94 1e-20
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 93 3e-20
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 83 3e-17
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 83 3e-17
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 74 2e-14
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 70 2e-13
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 70 3e-13
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 70 3e-13
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 67 2e-12
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 66 4e-12
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 62 7e-11
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 44 2e-05
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 29 0.44
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.3
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 3.1
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 26 4.1
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 4.1
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 26 4.1
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 26 4.1
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 4.1
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 25 5.4
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 25 9.4
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 149 bits (361), Expect = 3e-37
Identities = 71/132 (53%), Positives = 91/132 (68%), Gaps = 1/132 (0%)
Frame = +2
Query: 140 QNINPHYASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGISAFPESE-NLFK 316
QN NPH S K S D H+V+KRL+ ELM LM + GISAFP+S+ NL
Sbjct: 6 QNQNPHTNS-----KNSSSAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLH 60
Query: 317 WIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDK 496
W GTI GP +T Y G K+K+S+ FP +YPY+PP + F +P +HPNVD G ICLDILKDK
Sbjct: 61 WAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDK 120
Query: 497 WTALYDVRTVLL 532
W+A+Y+V+T+LL
Sbjct: 121 WSAVYNVQTILL 132
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 99.5 bits (237), Expect = 3e-22
Identities = 44/101 (43%), Positives = 63/101 (62%)
Frame = +2
Query: 230 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYA 409
KR+ +EL +L + SA P ++LF W TI GP ++ YAG + LS+ FP YP+
Sbjct: 4 KRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 410 PPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLL 532
PP V F T +HPN+++ G ICLDIL+D+W+ + VLL
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLL 104
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 94.3 bits (224), Expect = 1e-20
Identities = 46/104 (44%), Positives = 61/104 (58%)
Frame = +2
Query: 221 AVSKRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSY 400
A+ KR+ KE+ L R GI A P +NL + T+ GP ++ Y G K+ L L P+ Y
Sbjct: 2 ALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEY 61
Query: 401 PYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLL 532
P PP V+F+T +HPNVD G ICL LK W+ +RTVLL
Sbjct: 62 PMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLL 105
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 92.7 bits (220), Expect = 3e-20
Identities = 40/100 (40%), Positives = 60/100 (60%)
Frame = +2
Query: 230 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYA 409
+RL ++ + + G+SA P S+N+ W I GP +T + +KL L F YP
Sbjct: 7 RRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNK 66
Query: 410 PPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVL 529
PP+VKF++ FHPNV G +CLDIL+++W+ YDV +L
Sbjct: 67 PPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAIL 106
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 83.0 bits (196), Expect = 3e-17
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Frame = +2
Query: 206 LKDNHAVSKRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLE 385
+ DN S+R+ KEL ++ + GI + ++++ G GP T Y G + + +E
Sbjct: 1 MSDNR--SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIE 58
Query: 386 FPNSYPYAPPVVKFMTPCFHPNVDT-CGLICLDILKDKWTALYDVRTVLL 532
P YP+ PP + F T +HPNV + G ICLDILKD+W+ +Y +++ L+
Sbjct: 59 IPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALI 108
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 82.6 bits (195), Expect = 3e-17
Identities = 39/90 (43%), Positives = 53/90 (58%)
Frame = +2
Query: 227 SKRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPY 406
S+RL KE +L I +NLF W T GP ++VYAG K+ SL+FP YP+
Sbjct: 9 SRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPF 68
Query: 407 APPVVKFMTPCFHPNVDTCGLICLDILKDK 496
PP ++F T +HPN D+ G +CL ILK +
Sbjct: 69 QPPTIEFTTRIYHPNFDSEGNVCLAILKQQ 98
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 73.7 bits (173), Expect = 2e-14
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +2
Query: 230 KRLQKELMELMRCSDKGISAFPESEN-LFKWIGTINGPLETVYAGHKYKLSLEFPNSYPY 406
+RL KE EL GI+A P +E+ F W I GP T + G Y +L+FP+ YP
Sbjct: 8 RRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPL 67
Query: 407 APPVVKFMTPCFHPNVDTCGLICLDIL 487
PP +KF FHPNV G +C+ IL
Sbjct: 68 GPPTLKFECEFFHPNVYKDGTVCISIL 94
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = +2
Query: 221 AVSKRLQKELMELMRCSDKGISA-FPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNS 397
A + L+K+L E+ + +G S + +++F+W I GP +T+Y G + +L FP
Sbjct: 5 ASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQD 64
Query: 398 YPYAPPVVKFMTPCFHPNVDTCGLICLDIL 487
YP PP +KF T +HPNV G +C+ IL
Sbjct: 65 YPLMPPKMKFTTEIWHPNVHPNGEVCISIL 94
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 69.7 bits (163), Expect = 3e-13
Identities = 30/97 (30%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Frame = +2
Query: 230 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYA 409
+R++ ++M+L+ SD ++ ++N+ ++ +GP ET Y+G +K+ +E P+ YP+
Sbjct: 6 RRIETDVMKLLM-SDYEVTLV--NDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWK 62
Query: 410 PPVVKFMTPCFHPNVD-TCGLICLDILKDKWTALYDV 517
P + F+ FHPN+D G +CLD++ W+ ++D+
Sbjct: 63 SPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDM 99
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 69.7 bits (163), Expect = 3e-13
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Frame = +2
Query: 230 KRLQKELMELMRCSDKGISAF-PESE-NLFKWIGTINGPLETVYAGHKYKLSLEFPNSYP 403
KRL KE G+ P ++ ++F W I GP ET Y G ++ L + YP
Sbjct: 6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYP 65
Query: 404 YAPPVVKFMTPCFHPNVD-TCGLICLDILKDKWTALYDVRTVLL 532
+PP V F T HPN+ T G +C+DILK W+ + +++ L
Sbjct: 66 ISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACL 109
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 66.9 bits (156), Expect = 2e-12
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = +2
Query: 230 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYA 409
KRL KE + L + + + A P +EN+ +W I GP +T Y G +Y +L FP YP+
Sbjct: 8 KRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFK 67
Query: 410 PPVVKFMTPC--FHPNVDTCGLICLDILKDKWTALYDVRTVLL 532
PP ++ +TP F N C L D W + V T+L+
Sbjct: 68 PPAIRMITPSGRFQTNTRLC-LSFSDFHPKSWNPSWMVSTILV 109
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 65.7 bits (153), Expect = 4e-12
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Frame = +2
Query: 233 RLQKELMELMRCSDKGISAFP--ESE---NLFKWIGTINGPLETVYAGHKYKLSLEFPNS 397
RLQ+E + R G A P S+ +L W I G +T + G YKL++ FP
Sbjct: 8 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 67
Query: 398 YPYAPPVVKFMTPCFHPNVDTCGLICLDILKDK--WTALYDVRTVLL 532
YP PP +F P FHPNV G +CL IL ++ W ++ +LL
Sbjct: 68 YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILL 114
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 61.7 bits (143), Expect = 7e-11
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +2
Query: 338 PLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDV 517
P E Y G K+K ++ ++YP+ PP VK + +HPN+D G +CL+IL+ W + ++
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNL 119
Query: 518 RTVLL 532
++L+
Sbjct: 120 NSILV 124
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 43.6 bits (98), Expect = 2e-05
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 308 LFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVD-TCGLI---C 475
L W TI GP +V+ Y L + +YP APP+V F++ P VD G +
Sbjct: 38 LSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHK 97
Query: 476 LDILKDKWTALYDVRTVLL 532
+D L+ W Y + TVLL
Sbjct: 98 IDCLR-HWKREYSMETVLL 115
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 278 LYHCTALAPLALSGVVCSQHDCLLV*SCLHSA 183
LY C A + ++G VC CL V C H A
Sbjct: 181 LYECNACREIVIAGYVCDCGYCLHVYCCKHLA 212
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 39 FQIQQEVDDD*LKNWCPLAILRKCSFDFLKILWLKTSIHITRRLRTQL 182
F Q+ D + N+ + LRKC + L+ K H +RT+L
Sbjct: 494 FSTHQQFADARIGNYLGIQSLRKCLINVLEYTMSKNLQHTADSIRTEL 541
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 140 QNINPHYASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMR 265
QNI+ ++ + S K SED KL +N +V + + + ++
Sbjct: 920 QNISTNHTNDSAALKSSEDHSKLANNFSVPDSIDHKFYQQVK 961
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 307 PLQMDRDHQWTFRN 348
P+QMD+DH + F N
Sbjct: 237 PIQMDKDHSYNFAN 250
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 161 ASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGISA 289
+ + N + S K++HA K+LQKE + +D + A
Sbjct: 91 SEAENDEESSSQKSNSKESHAQRKKLQKERKAMKPFADTSLKA 133
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 371 KLSLEFPNSYPYAPPVVKFMTPCFHPNV 454
KLS+E+ N P AP +V CF +V
Sbjct: 112 KLSMEWDNIMPNAPGLVNLGNTCFMNSV 139
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 332 NGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDI 484
NG + V+ H L + PY V++ MTP HP+ C L L +
Sbjct: 296 NGAVSGVFTAHDVVLRVLAAGLDPYRSSVIRVMTP--HPD---CALASLRV 341
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 365 KYKLSLEFPNSYPYAPPVVK 424
K L +E SYPY PV+K
Sbjct: 62 KLDLCIELGRSYPYVKPVIK 81
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 143 NINPHYASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELM--RCSDKGISAFPESENLFK 316
N P+Y SS P +ED + ++++ A +K+ + + + K S F E +
Sbjct: 175 NCWPYYTSS--PTSDAEDLVYIQNSKATNKKYMATVSPIFYTHFTSKNYSFFSEGLWFTR 232
Query: 317 WIGTI 331
W+ I
Sbjct: 233 WMQLI 237
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 9.4
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 77 KLVSLGYFKKVFI*FP*-NIMAQNINPHYASSSNPAKQSEDTIKLKDNHAVSKRLQKELM 253
KL+ + +FK+V I + N P K + T+K+ D +S+ + K
Sbjct: 271 KLLDIPHFKEVIIMSTVCDRCGYRSNEVKTGGEIPPKGRKITLKVMDAEDLSRDILKSET 330
Query: 254 ELMRCSDKGISAFPESENLFKWIGTINGPLETVY 355
++ + G+ FP + L TI G L VY
Sbjct: 331 ASLKIPELGLDLFPGT--LGGRFTTIEGLLAQVY 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,808
Number of Sequences: 5004
Number of extensions: 46875
Number of successful extensions: 148
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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