Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1122
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106583-12|AAD03133.1|  432|Caenorhabditis elegans Hypothetical...    28   6.7  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    27   8.8  

>AF106583-12|AAD03133.1|  432|Caenorhabditis elegans Hypothetical
           protein F23C8.11 protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 61  KKSYAQY*NYYV*SNIFYVFELFNYCCYFLYNVS*RPSDNHFK 189
           K S+AQ  N+Y       +  ++N  CY     S R +D HFK
Sbjct: 258 KDSFAQLTNFYQQLLPIMITPVYNIWCYTYRPKSCRRTDKHFK 300


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 492 IFYFEFTQTLKSLYEISYLKFIYLFYLELSAKQILLSGVYFV 367
           +FYF  ++     ++  ++K+I   Y    +K+IL  G+Y V
Sbjct: 123 LFYFPSSERSSIKFQKLFIKYINYVYTVFVSKEILTIGLYAV 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,937
Number of Sequences: 27780
Number of extensions: 210637
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)