Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1114
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1045 - 8241862-8242881 183 1e-46
06_01_0189 + 1470006-1470989 182 2e-46
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628... 31 1.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 3.2
03_01_0399 + 3097878-3098141,3098254-3098547,3098659-3098886,309... 28 5.6
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958... 28 7.5
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 9.9
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 27 9.9
>06_01_1045 - 8241862-8242881
Length = 339
Score = 183 bits (446), Expect = 1e-46
Identities = 85/124 (68%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
Frame = +3
Query: 6 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWET-LKDSERHFI 182
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHFI
Sbjct: 14 EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFI 73
Query: 183 KHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDP 362
HVLAFFAASDGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSLL++TYIRD
Sbjct: 74 SHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDG 133
Query: 363 KERD 374
E+D
Sbjct: 134 AEKD 137
Score = 119 bits (287), Expect = 2e-27
Identities = 61/103 (59%), Positives = 75/103 (72%)
Frame = +3
Query: 345 TYIRDPKERDEGLHTDFACLMFQHLVQKPTKECVLHIIKDAVVIEQEFLTDALPVRLLGM 524
T+ + RDEGLH DFACL++ L K + V I+ DAV IE+EF+ DALPV L+GM
Sbjct: 201 TFSNELISRDEGLHCDFACLLYDLLRGKLDEARVREIVADAVDIEREFVCDALPVALVGM 260
Query: 525 NCELMSQYIEFVADRLLVDLIGEKHYNTKNPFDFMNLISLEGK 653
N +LMSQYIEFVADRLL+ L +K YN NPFD+M LISL+GK
Sbjct: 261 NGDLMSQYIEFVADRLLMALGCKKMYNVANPFDWMELISLQGK 303
>06_01_0189 + 1470006-1470989
Length = 327
Score = 182 bits (443), Expect = 2e-46
Identities = 84/124 (67%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
Frame = +3
Query: 6 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWET-LKDSERHFI 182
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHF+
Sbjct: 2 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFV 61
Query: 183 KHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDP 362
HVLAFFAASDGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSLL++TYIRD
Sbjct: 62 SHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDD 121
Query: 363 KERD 374
E+D
Sbjct: 122 VEKD 125
Score = 121 bits (291), Expect = 6e-28
Identities = 62/103 (60%), Positives = 75/103 (72%)
Frame = +3
Query: 345 TYIRDPKERDEGLHTDFACLMFQHLVQKPTKECVLHIIKDAVVIEQEFLTDALPVRLLGM 524
T+ + RDEGLH DFACL++ L K + V I+ DAV IE+EF+ DALPV L+GM
Sbjct: 189 TFSNELISRDEGLHCDFACLLYDLLRGKLDESRVQEIVADAVDIEREFVCDALPVALVGM 248
Query: 525 NCELMSQYIEFVADRLLVDLIGEKHYNTKNPFDFMNLISLEGK 653
N ELMSQYIEFVADRLL+ L +K YN NPFD+M LISL+GK
Sbjct: 249 NGELMSQYIEFVADRLLMALGCKKMYNVANPFDWMELISLQGK 291
>01_06_1200 -
35362412-35362432,35362526-35362715,35362799-35362899,
35362985-35363116,35363204-35363302,35363493-35363568,
35363649-35363941,35364032-35364160,35364332-35364480,
35364562-35364633,35364728-35364776,35365039-35365107,
35365201-35365256,35365357-35365429,35365508-35365584,
35365847-35365934,35366086-35366259,35366358-35366473,
35366681-35366984,35367084-35367146,35367224-35367286,
35367393-35367506,35368672-35368675,35368894-35368952,
35369024-35369098,35369691-35369798,35372331-35372792
Length = 1071
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 300 AMENVHSEMYSLLIDTYIRDPKERDEGLHTDFACLMFQHLVQKPTKECVLHIIKDAVVIE 479
AME+VH+E+++ + D D H FA Q+ ++ T C H + V +E
Sbjct: 545 AMESVHAEVHNSTDHIDVGDVHVLDANAHNQFASGAVQN--EQQTSPCCNHDVDSYVPLE 602
Query: 480 QEFLTDALPV 509
+ L D +P+
Sbjct: 603 ND-LPDNVPL 611
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -3
Query: 288 HRNILPQ*LELLVKISQPSFHLQCHLKPQRKQGHA**NVSHYLLRFPSLINPWTNRLPRR 109
H ++ P L + +SQ SF + P H + H+ L PSLI PW RL +
Sbjct: 795 HPSLRP--LRTVSSLSQSSFEEYLDISPPSPTFHEK-HQQHFNLDPPSLIPPWQLRLAKT 851
Query: 108 SKTKLQLSCTFA 73
+ ++ CT +
Sbjct: 852 KENEI-YPCTLS 862
>03_01_0399 +
3097878-3098141,3098254-3098547,3098659-3098886,
3099148-3099224,3099501-3099540,3099737-3099802,
3100305-3100706,3100777-3100888,3101445-3101530,
3101607-3101672
Length = 544
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +3
Query: 276 RCFYGFQIAMENVHSEMYSLLIDTYIRDPKERDEGLHTDF-AC--LMFQHLVQKPTKECV 446
+ YG +E +HS Y L +D + D + + C L+F + K+ V
Sbjct: 280 KIIYGLYTQLEEIHSYGYVLHLDGFRSDSERIMRDIQRSAGGCQVLLFSATFNERVKDFV 339
Query: 447 LHIIKDA--VVIEQEFLT 494
+IKD + +++E LT
Sbjct: 340 TRVIKDGNQIFVKKEELT 357
>03_02_0844 +
11695159-11695263,11695402-11695463,11695789-11695876,
11695958-11696019,11696250-11696346,11696592-11696984,
11697072-11697611,11697856-11697966,11698102-11698242,
11698290-11698394,11698480-11698557,11699346-11699472,
11699580-11699625,11699709-11699754
Length = 666
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -2
Query: 520 PSSLTGSASVRNSCSMTTASFIICRTHSLVGF*TKCWNIRQAKSVCRPSSLSFGSLM*VS 341
P+ L S + +N+ S+T S + C+ S ++ W+ +AKSV + SLM
Sbjct: 415 PTWLQSSKTSKNNASVTDQSDVPCKYTSSDASNSQAWSAFEAKSVSTQQASPDLSLMSSI 474
Query: 340 ISREYISE 317
+E I E
Sbjct: 475 EPKEPIDE 482
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 18 LRENPRRFVIFPIQYPDIWQMYKKAEAS---FWTVEE 119
L+ +P+R V+ +Q PDI + K A+ +WT+++
Sbjct: 369 LQHDPQRMVLEALQQPDILGVVKHLAAAGFVYWTIDD 405
>05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 66 DIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFIK--HVLAFFAASDGIVNE 230
DIWQ+ KA+ W E+ +K + ++LK++ + ++ H L+ DG NE
Sbjct: 1246 DIWQVLAKAKYQDW---EIHSTKRVWKMQSLKEACENALQEHHFLSGTLVGDGSTNE 1299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,258,108
Number of Sequences: 37544
Number of extensions: 350558
Number of successful extensions: 808
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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