Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1114
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical pr...   189   2e-48
U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical pr...    91   6e-19
Z82069-3|CAB04908.1|  129|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical
           protein C03C10.3 protein.
          Length = 381

 Score =  189 bits (460), Expect = 2e-48
 Identities = 85/122 (69%), Positives = 102/122 (83%)
 Frame = +3

Query: 9   EPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFIKH 188
           EP+L++   RFVIFP+++ DIW  YKKA ASFWTVEEVDL KD++DWE +   E++FI  
Sbjct: 62  EPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISR 121

Query: 189 VLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKE 368
           +LAFFAASDGIVNENL ERFS EVQV+EAR FYGFQIA+EN+HSEMYS LI+TYIRD  E
Sbjct: 122 ILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIRDETE 181

Query: 369 RD 374
           R+
Sbjct: 182 RN 183



 Score =  135 bits (326), Expect = 3e-32
 Identities = 64/103 (62%), Positives = 80/103 (77%)
 Frame = +3

Query: 345 TYIRDPKERDEGLHTDFACLMFQHLVQKPTKECVLHIIKDAVVIEQEFLTDALPVRLLGM 524
           T+  +   RDEGLH DFACL++  L +K T++ +  IIKDAV IEQEFLT+ALPV ++GM
Sbjct: 248 THSNELISRDEGLHRDFACLLYSKLQKKLTQQRIYDIIKDAVAIEQEFLTEALPVDMIGM 307

Query: 525 NCELMSQYIEFVADRLLVDLIGEKHYNTKNPFDFMNLISLEGK 653
           NC LMSQYIEFVAD LLV+L  +K Y +KNPFDFM  IS++GK
Sbjct: 308 NCRLMSQYIEFVADHLLVELGCDKLYKSKNPFDFMENISIDGK 350


>U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical
           protein F19G12.2 protein.
          Length = 668

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 40/77 (51%), Positives = 57/77 (74%)
 Frame = +3

Query: 423 QKPTKECVLHIIKDAVVIEQEFLTDALPVRLLGMNCELMSQYIEFVADRLLVDLIGEKHY 602
           +KP +  +  II ++V++EQ+F+ ++LP  L+GMN  +M +Y+EFVAD LL +L   K Y
Sbjct: 561 RKPAESRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKYVEFVADLLLEELGYSKRY 620

Query: 603 NTKNPFDFMNLISLEGK 653
           NTKNPFDFM  IS+EGK
Sbjct: 621 NTKNPFDFMENISIEGK 637



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = +3

Query: 297 IAMENVHSEMYSLLIDTYIRDPKERD 374
           IA+EN+HSEMY+ L++ YIRD  ER+
Sbjct: 445 IAVENIHSEMYAKLLEAYIRDDAERN 470


>Z82069-3|CAB04908.1|  129|Caenorhabditis elegans Hypothetical
           protein W04A8.4 protein.
          Length = 129

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = +3

Query: 87  KAEASFWTVEEVDLSKDLSDWETLKDSERHFIKHVLAFFAASDGIVNENLVERFSQEVQV 266
           KAEA++WT  ++   + +SDW     +  H     L  +A  D IV   ++++  + +  
Sbjct: 56  KAEATYWTGLDLHKGETMSDW-----TNTHLRGDQLR-YAIMDTIVMHLIIKQRLRNIHK 109

Query: 267 TEARCFYGFQIAMENVHSEMYS 332
            + R    FQ   EN H   Y+
Sbjct: 110 NDPRL---FQYVFENGHPLPYN 128


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = -1

Query: 512 SYRERICEKLLFNDYCI-FYNMQDTFLSWLLN*VLEHQTSKICMQTLIPLLRISDVGIYK 336
           S+R  +  KLL + + + +YN+Q+  L WL + +   +TS +  Q     LR+    IY 
Sbjct: 235 SFRMVLRGKLLEDHHSLAYYNIQEGALIWLYSHLKMSETSSLMSQ--FQKLRVETSKIYN 292

Query: 335 QGIHFRMNIFHGYLEAIETSCLSDLNFL*KSLNQVFI 225
           +      N      +  ET  L + +     + Q F+
Sbjct: 293 EFTEMVKNETSDMKKQQETQILKEQDEFQDEIRQEFL 329


>Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical
           protein C27D8.2 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 525 NCELMSQYIEFVADRLLVDLIGEKHYNTKNP 617
           +CEL+  +  FVAD +L+ L G+ H N   P
Sbjct: 198 SCELVVTHEMFVADVILLWLNGQNHVNAFAP 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,138,572
Number of Sequences: 27780
Number of extensions: 320673
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)