Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1114
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.37 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   2.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.9  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 48  FPIQYPDIWQMYKKAEASFWTVEEVDLSKD 137
           FP Q P  W++ K AE + + V E DLS D
Sbjct: 217 FPYQPPFAWKILKAAEEAGFGVSE-DLSGD 245


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 137 FIRLGNLKR**ETFHQACPCFLCG 208
           ++ LG LK    T    C C LCG
Sbjct: 26  YVSLGALKMHIRTHTLPCKCHLCG 49


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 99  SFWTVEEVDLSKDL 140
           +FWT  +VDLS+ L
Sbjct: 450 TFWTKSDVDLSRGL 463


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 575 C*SNWRKALQHKEPLRLHE 631
           C  +W   +Q K+P++L E
Sbjct: 429 CLISWNPLMQPKQPIKLFE 447


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 417 LVQKPTKECVLHIIKDAVV 473
           L QK   +C+   ++DAVV
Sbjct: 35  LPQKEYNQCIAEAVRDAVV 53


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 520 PSSLTGSASVRNSCSMTTAS 461
           PSSL  SAS  ++ S  +AS
Sbjct: 181 PSSLVSSASASSAVSAASAS 200


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 147 SLINPWTNRL 118
           S INPWT +L
Sbjct: 393 SFINPWTKKL 402


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 147 SLINPWTNRL 118
           S INPWT +L
Sbjct: 99  SFINPWTKKL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,057
Number of Sequences: 438
Number of extensions: 3644
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)