Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1111
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...   107   5e-24
Z73972-7|CAA98262.2|  305|Caenorhabditis elegans Hypothetical pr...    33   0.19 
U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical...    30   1.8  
AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical ...    29   3.1  
U70857-12|AAB09168.1|  337|Caenorhabditis elegans Serpentine rec...    29   4.1  
AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine re...    29   4.1  
Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical ...    28   7.1  
U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    27   9.4  
AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like ...    27   9.4  

>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score =  107 bits (258), Expect = 5e-24
 Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
 Frame = +3

Query: 258 YLERAKEHDEFMKRQQFEYNIGKRHLANMMGEDPELFTQKDVERAIEYLFPSGIYDPAAR 437
           YL+ +++H   M++ + E+  G+RHLA MM  D     Q+ ++RAI YLFPSG+ DP AR
Sbjct: 38  YLKHSQQHVAMMEKHRAEFETGRRHLAKMMSLDIHELDQEAIDRAILYLFPSGLTDPNAR 97

Query: 438 PSMRPPEDVFPARKAAEFDEAGRPHHCLFYTGKPNFFKLLHDAADHLQQLYK-YEDQVIR 614
           P MRPP+++ P  +   FDE G+P    F+T  P  + LL D       + K Y++ V  
Sbjct: 98  PVMRPPDEILPKFQRFTFDEEGKPEGSRFFTLSPKIYGLLSDIGVKTHSVMKFYDEHVGS 157

Query: 615 KKATPDPNGNLQLGGSMWVNKD 680
           +           L GS WV  D
Sbjct: 158 RSVNRSDLEPANLSGSQWVTAD 179


>Z73972-7|CAA98262.2|  305|Caenorhabditis elegans Hypothetical
           protein F15H10.5 protein.
          Length = 305

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = -1

Query: 386 LYILLSKQFRIFAHHIRKMSFSNVIFKLLSFHKLVMFFCSL 264
           LY  L K ++ F H ++ MSF  VI  L S  KLVM F  L
Sbjct: 91  LYHKLKKYYKYFEHVMKVMSFVEVIHDLWSGGKLVMQFFEL 131


>U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical
           protein C15H9.5 protein.
          Length = 581

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -1

Query: 401 IFYSALYILLSKQFRIFAHHIRKMSFSNVIFKLLSFHKLVMFFCSL*ISFHGLTYLFL 228
           ++ S LY  L+    ++  H+   S S  I+++  F  +++F  +L + FHGL Y FL
Sbjct: 262 LYMSILYFGLA----VYWSHLLCRSNSENIYRVHKFMAVLVFLKALSVFFHGLNYYFL 315


>AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical
           protein Y62H9A.10 protein.
          Length = 396

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 481 PLNSTKLEDLTIVCFILENQISLNYFMTLP-TIYNNFTNMKTKLLERKQLLIQMAIYNSG 657
           PLN  + EDL ++ +I     ++  F+ +P  IY     +KT    +K+L++ +A+  S 
Sbjct: 9   PLNYVRNEDLFVITYIYVVFGAITLFLNIPLAIY----LLKTTSKNQKELIVIIALSLSD 64

Query: 658 VVC 666
            VC
Sbjct: 65  TVC 67


>AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical
           protein ZK1055.5 protein.
          Length = 369

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = +3

Query: 117 KYFRYPLTIGTFQYCTRTTSDPSNVLNDLTDWETLNXXXXXXXXXXAYLERAKEHDEFMK 296
           K + Y LTI T+ + T  +  P+N   + TDW              AY+   ++ D  M 
Sbjct: 90  KKYGYNLTIPTYPFVTVESKFPTNCTWEFTDW-LEQQTRRTDRRPRAYIPDGEQRDYLMN 148

Query: 297 RQQFEYNIGKRHLANMM 347
           +    YNI   H  +++
Sbjct: 149 K----YNIVTWHARDVL 161


>U70857-12|AAB09168.1|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 26 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
 Frame = -1

Query: 512 VRSSSFVEFSG--FASGKDVFWWPHRWSCGRIVNTAGE*IFYSALYILLSKQFRIFAHHI 339
           V  +S++ F G  F + +    W  R S GR+        F     +L S + R    H+
Sbjct: 174 VGHTSYLPFYGNTFIAYEHRIPWA-RTSYGRLAIALPTLFFTIYSSVLTSAKLRKLGKHM 232

Query: 338 RKMSFS-NV--IFKLLSFHKLVMF-FCSL*ISFHGLT 240
           RK+ +S N+  IF  L F  +V+  FC + IS   LT
Sbjct: 233 RKVEYSMNIATIFNTLGFILVVILNFCYVGISAQALT 269


>AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine
           receptor, class h protein270 protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 398 FYSALYILLSKQFRIFAHHIRKMSFSNVIFKLLSFHKLVMFFCSL*ISFHG 246
           F  A+YI +S  F + +  +  + F+ + F    +H++   FCSL ++ HG
Sbjct: 240 FLRAIYIQVSAPFLLLSAPVAYL-FTTIYFNF--YHQVANNFCSLLLAVHG 287


>Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical
           protein T23D5.7 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 6   LIYIFITIFDATKDICSNLHTAKMSLIGIRQIIPAATKYFRYPLTIGTFQ--YCTRTTSD 179
           L+ IF+TIF   KD+    +   + L     I  A+ ++  YP+ + +F   Y   TT+ 
Sbjct: 24  LVLIFLTIFYVRKDL--GAYKRLIVLFAAMGIAFASIEFVMYPV-LHSFNAGYVFYTTNR 80

Query: 180 PSNVLND 200
           P NV N+
Sbjct: 81  PLNVSNE 87


>AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7a protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +3

Query: 315 NIGKRHLANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFD 494
           N  K+ L  M+GE P+  T        EY+  +G   P++  SM+  + +  +  AAE D
Sbjct: 470 NSMKKQLDEMLGEPPQHHT--------EYMDEAG--GPSSTSSMKRMK-MMNSHGAAEDD 518

Query: 495 EA---GRPHHCLFYTGKPNF 545
           E    G  HH +  +GKP F
Sbjct: 519 EDDDDGGHHHVVGNSGKPRF 538


>AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7b protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +3

Query: 315 NIGKRHLANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFD 494
           N  K+ L  M+GE P+  T        EY+  +G   P++  SM+  + +  +  AAE D
Sbjct: 468 NSMKKQLDEMLGEPPQHHT--------EYMDEAG--GPSSTSSMKRMK-MMNSHGAAEDD 516

Query: 495 EA---GRPHHCLFYTGKPNF 545
           E    G  HH +  +GKP F
Sbjct: 517 EDDDDGGHHHVVGNSGKPRF 536


>AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7c protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +3

Query: 315 NIGKRHLANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFD 494
           N  K+ L  M+GE P+  T        EY+  +G   P++  SM+  + +  +  AAE D
Sbjct: 442 NSMKKQLDEMLGEPPQHHT--------EYMDEAG--GPSSTSSMKRMK-MMNSHGAAEDD 490

Query: 495 EA---GRPHHCLFYTGKPNF 545
           E    G  HH +  +GKP F
Sbjct: 491 EDDDDGGHHHVVGNSGKPRF 510


>U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical
           protein F25E2.3 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 408 PSGIYDPAARPSMRPPEDVFPARKAA 485
           P  I   +  P + PPE + PAR+AA
Sbjct: 141 PDAIKHSSKMPEVTPPEQLLPAREAA 166


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
            protein C28H8.3 protein.
          Length = 1714

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 348  GEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPED 461
            GED     +K  ERA+  L P G+Y P        PED
Sbjct: 993  GEDDGAVHKKAGERAVIPLMPYGVYMPEKLRMFSIPED 1030


>AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like
           protein family protein7 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 597 EDQVIRKKATPDPNGN 644
           E+ V+R++A+P PNGN
Sbjct: 26  EEPVVRERASPSPNGN 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,920
Number of Sequences: 27780
Number of extensions: 323930
Number of successful extensions: 865
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)