Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1109
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 244 1e-65
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 243 2e-65
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 32 0.062
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 1.3
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 27 1.8
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 2.3
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 2.3
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.1
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 5.4
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 7.2
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 25 7.2
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 25 9.5
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 244 bits (596), Expect = 1e-65
Identities = 121/198 (61%), Positives = 145/198 (73%)
Frame = +1
Query: 28 HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 207
HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWG
Sbjct: 9 HKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWG 68
Query: 208 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAK 387
SE ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G KG K
Sbjct: 69 SEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKK 127
Query: 388 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 567
T +S+ RK+ AR +KV+ ALE QF GRL A V+SRPGQ GR DGY
Sbjct: 128 ATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGY 182
Query: 568 ILEGKELEFYLRKIKSKR 621
ILEG+EL FYLR++ K+
Sbjct: 183 ILEGEELHFYLRRMAPKK 200
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 243 bits (594), Expect = 2e-65
Identities = 121/198 (61%), Positives = 145/198 (73%)
Frame = +1
Query: 28 HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 207
HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWG
Sbjct: 9 HKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWG 68
Query: 208 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAK 387
SE ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G KG K
Sbjct: 69 SEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKK 127
Query: 388 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 567
T +S+ RK+ AR +KV+ ALE QF GRL A V+SRPGQ GR DGY
Sbjct: 128 ATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGY 182
Query: 568 ILEGKELEFYLRKIKSKR 621
ILEG+EL FYLR++ K+
Sbjct: 183 ILEGEELHFYLRRMAPKK 200
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 32.3 bits (70), Expect = 0.062
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 598 DRTRVLCLLRCNHRRDHTDLGDSPRKPANALCGIALLE 485
D + CLLR H+RD + + RK N L G LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +1
Query: 97 PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 276
P NT + PQ RSR T R+L +G S S ++ +TR V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581
Query: 277 RTKTLVKNAIVVVDATPFRQWYE 345
+ ++ V TPF +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 25 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 180
W K T K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 34 WSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = +1
Query: 319 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 498
+TP + H KKG+K+ A++ ++R + AR+ A + K ++E+
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813
Query: 499 FHTGRLLACVASR 537
+LA + +
Sbjct: 814 TDPQTILAILKQK 826
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 85 ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 237
EL +N + Q+ + S T YRA+ LDTG+ E + K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 202 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 375
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 376 K 378
+
Sbjct: 310 Q 310
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 341 YHCLNGVASTTTIAFLTRVFVRTNS 267
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 263 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 177
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 412 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 582
++ K +K A + L RQ+ K A EE+ RLL G+ GR ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 567 VTIGATTLTWATRHASQ-QTPCVELLF*STLNLSKTLPCQ 451
+T+G T+L+W+ RH+ + + C E + N +K P +
Sbjct: 329 LTLGGTSLSWSWRHSGRIVSACQEYCY--VWNFNKANPLE 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,071
Number of Sequences: 5004
Number of extensions: 49984
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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