Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1109
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 349 5e-96
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 349 5e-96
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 349 5e-96
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 349 5e-96
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 289 8e-78
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 120 4e-27
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 4.7
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 4.7
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 4.7
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 4.7
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 349 bits (858), Expect = 5e-96
Identities = 157/202 (77%), Positives = 178/202 (88%)
Frame = +1
Query: 22 HWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFS 201
+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFS 66
Query: 202 WGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKG 381
WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKG
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKG 126
Query: 382 AKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRAD 561
AKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRAD
Sbjct: 127 AKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRAD 186
Query: 562 GYILEGKELEFYLRKIKSKRAK 627
GY+LEGKELEFYLRKIK+++ K
Sbjct: 187 GYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 349 bits (858), Expect = 5e-96
Identities = 157/202 (77%), Positives = 178/202 (88%)
Frame = +1
Query: 22 HWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFS 201
+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFS 66
Query: 202 WGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKG 381
WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKG
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKG 126
Query: 382 AKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRAD 561
AKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRAD
Sbjct: 127 AKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRAD 186
Query: 562 GYILEGKELEFYLRKIKSKRAK 627
GY+LEGKELEFYLRKIK+++ K
Sbjct: 187 GYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 349 bits (858), Expect = 5e-96
Identities = 157/202 (77%), Positives = 178/202 (88%)
Frame = +1
Query: 22 HWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFS 201
+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFS 66
Query: 202 WGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKG 381
WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKG
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKG 126
Query: 382 AKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRAD 561
AKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRAD
Sbjct: 127 AKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRAD 186
Query: 562 GYILEGKELEFYLRKIKSKRAK 627
GY+LEGKELEFYLRKIK+++ K
Sbjct: 187 GYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 349 bits (858), Expect = 5e-96
Identities = 157/202 (77%), Positives = 178/202 (88%)
Frame = +1
Query: 22 HWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFS 201
+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFS
Sbjct: 7 NWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFS 66
Query: 202 WGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKG 381
WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKG
Sbjct: 67 WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKG 126
Query: 382 AKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRAD 561
AKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRAD
Sbjct: 127 AKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRAD 186
Query: 562 GYILEGKELEFYLRKIKSKRAK 627
GY+LEGKELEFYLRKIK+++ K
Sbjct: 187 GYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 289 bits (708), Expect = 8e-78
Identities = 140/202 (69%), Positives = 161/202 (79%)
Frame = +1
Query: 22 HWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFS 201
+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 7 NWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------------- 51
Query: 202 WGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKG 381
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKG
Sbjct: 52 ----C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKG 106
Query: 382 AKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRAD 561
AKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRAD
Sbjct: 107 AKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRAD 166
Query: 562 GYILEGKELEFYLRKIKSKRAK 627
GY+LEGKELEFYLRKIK+++ K
Sbjct: 167 GYVLEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 120 bits (289), Expect = 4e-27
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = +1
Query: 388 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 567
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 568 ILEGKELEFYLRKIKSKRAK 627
+LEGKELEFYLRKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 367 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 513
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 367 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 513
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 367 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 513
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 367 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 513
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,229,530
Number of Sequences: 237096
Number of extensions: 2045520
Number of successful extensions: 4771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4771
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -