Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1108
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    29   0.28 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.28 
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    27   1.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   1.9  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   4.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   5.9  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   7.9  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   7.9  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   7.9  

>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = +3

Query: 18  VKCLGDIAFVLIKTIADMKCLTIAALLFVAGLS-IAEKYTDKYDNIDVDEILENRKLLVP 194
           +KCLGD+A  +   I D  C++I   ++   +S + ++ T   + + + +  +   LL+P
Sbjct: 376 IKCLGDVALKVPSVIND--CISIFLEIYELNISYMVQEVTVVMETV-LRKYPQKIDLLLP 432

Query: 195 YIKCVLDE 218
           Y+  V++E
Sbjct: 433 YLSRVIEE 440


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 195  YIKCVLDEGRCTPDGKELKAHIK-DGMQTACAKCTDKQKVSARKIVKHIK--QHEADYWE 365
            +I CVL +G        +    K +G Q  C  C D  K    +++KH+K  + E+ Y +
Sbjct: 1336 HISCVLTQGAYIDLISCITKFAKLNGNQKFCLSCVDMLKNLEHELIKHLKHMKKESVYSK 1395

Query: 366  QMKAKY 383
            +++ +Y
Sbjct: 1396 KLEEEY 1401


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 285 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKD 395
           A  +D+++   R  V H K H   Y +  K  +DPKD
Sbjct: 12  AASSDEERPEMRS-VSHSKSHLEGYDDDHKIAFDPKD 47


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 151 MLSYLSVYFSAIDKPATNKSAAIVRHFMSAM 59
           +++ LSVY+S   +   +K   +V+HFM+++
Sbjct: 540 LMNCLSVYYSKYFEGKDSKKFTLVKHFMNSL 570


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 27  LGDIAFVLIKTIADMKCLTIAALLFVAGLSIAEKYTDKYDNID-VDEILENRKLL 188
           L  +  V IK     +   +    F+  ++I EKY + YD+++ VDE   ++ ++
Sbjct: 710 LNTLGPVTIKLACGTEFSFMKPACFLKNVAIGEKYVEPYDHMEIVDETTGDKAVI 764


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 307 RCQPERSLNTLSSTKLITGSR*RPNMIPKMNSK 405
           +  PE    ++S T+  T  +  P+ +PKMN K
Sbjct: 432 KVNPEPHSESISDTRPSTPRKVPPSTVPKMNPK 464


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 126  KYTDKYDNIDVDEILE 173
            +Y DK D  DVDEI E
Sbjct: 1038 EYIDKLDKYDVDEIAE 1053


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 397 SSLGSYLAFICSQ*SASCCLMCLTI 323
           S + SYL FI S     C  +CL I
Sbjct: 218 SEIRSYLEFILSNLDLECLTLCLKI 242


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 150 IDVDEILENRKLLVPYIKCVLDEGRCTPD--GKELKAHIKD 266
           I  D IL+    + P I  +LD+GR   +  G E KA  K+
Sbjct: 644 IRTDTILDEEVPVDPLITSILDDGRWWEEMFGSERKAGFKE 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,577
Number of Sequences: 5004
Number of extensions: 37225
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)