Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1107
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    29   0.56 
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    27   3.0  
SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces ...    26   5.2  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.2  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   6.9  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   9.1  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
 Frame = -2

Query: 509 IELYDQDTLLIVKLS**IGFYYETLKTIKHLTKLGVFHMIWDFNMLTS*YYNLTAAFGQL 330
           I+LY  +T  + KL      +    K +  L K+G    I DF  + +     T AFG  
Sbjct: 444 IKLYAWETPFLQKL-----LHIRNTKELSMLKKIGFITAIGDFAWIFTTIIVTTVAFGAF 498

Query: 329 LVKSLKASAICC-LVF--VVLKSLELVPSAFFTPSILKPKVEVELIVS 195
           ++   K  A+   +VF  V L +L   P A   P+++   +E  + VS
Sbjct: 499 IIFHGKTQALTADIVFPAVSLFNLLQFPLAML-PTVISSLLEASVSVS 545


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
 Frame = -2

Query: 416 TKLGVFHMIWDFNMLTS*YYNLTAAFGQLLVKSLKASA--ICCLVFVVLKSLELV----- 258
           TK+  F +  D  M     YNL  A G++++ S++ +   I      VL++ E++     
Sbjct: 570 TKVEGFSISADLTMDVQWSYNL--AEGEIVIASIRRNPHEIVASFGRVLQNREVMYKYLN 627

Query: 257 PSAFFTPSILKPKVEVELIVSL--QIMYLGFVTPLLLCSSSEGAFGSIWIIFSYIS--WN 90
           P+ F   S  K  + V ++ S+   I+Y      ++L     G F   W+++SY S   N
Sbjct: 628 PNLFALFSKCKNDLVVYVMDSVTGSIVYQNKHQGIILFDKVYGVFSENWLVYSYQSDVPN 687

Query: 89  DENKLISI 66
              K+IS+
Sbjct: 688 LSTKIISV 695


>SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 223 GFRIDGVKKADGTSSKDFK--TTKTR-QQIAEAFKDFTSSCPNAAVRL 357
           G  + G  + +    K+F   T KT  +QIAEAF D+T+   + A+ L
Sbjct: 23  GMLLAGTGQVNENGDKNFFIITQKTTDEQIAEAFDDYTTKRKDIAIVL 70


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 360 ILTS*HIEIPNHMEYSQFR*VLNSLKCFIVKTYLLTQLDD 479
           +L+  +++ P+   + ++   LN+L C  +K Y+L  L D
Sbjct: 71  LLSDRYLQPPSKRIFKRWNMELNNLNCPDIKRYILESLQD 110


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
 Frame = -2

Query: 509 IELYDQDTLLIVKLS**IGFYYETLKTIKHLTKLGVFHMIWDFNMLTS*YYNLTAAFGQL 330
           I+LY  + + + KL           + ++ L K+G+ + I +F  L +      A FG  
Sbjct: 447 IKLYAWENIFLQKL-----LQLRNTRELRMLKKIGIVNTIGNFTWLFAPILVSAATFGTF 501

Query: 329 LVKSLKASAICC-LVFVVLKSLELVPSAFFTPSILKPKVEVELIVSLQIMYLGFVT 165
           +V   K   +   +VF  L    L+        I+   V +E  V++  +Y GF+T
Sbjct: 502 IVLYGKTRVLSVDIVFACLSLFNLLQFPLTMLPIVVSSV-LEASVAISRIY-GFLT 555


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 60  LKNTNKFIFIIPGYV*KDDPNRPKSTFRRRAQ 155
           L  T K  FI PGY     PNR  + ++ R Q
Sbjct: 202 LMETAKPYFIYPGYAFVCYPNRDSTVYQERYQ 233


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
            factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 254  SAFFTPSILKPKV 216
            S FFTP IL PKV
Sbjct: 966  STFFTPEILSPKV 978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,965
Number of Sequences: 5004
Number of extensions: 46132
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)