Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1106
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   2.1  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   2.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.6  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.6  

>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +2

Query: 80  TLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMETQTSVATPTEDGLEIYSSTQWLD 259
           +L+  +  VQP  +    STV    ++I  QY+   E   ++     D LEIY S     
Sbjct: 106 SLLLSNSNVQPFVNKFYTSTVFPSFLQILKQYNVAQEEFFAILCVVCDSLEIYHSNLSTL 165

Query: 260 LTNIAIAKCLDM 295
           L N     C+D+
Sbjct: 166 LPN-NFELCIDV 176


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 163 NFHRAFNYSAYIGS*VSWLNCHILPYESFPFGGIED 56
           N   A   S  + +   W+NC+ L +   PFGG ++
Sbjct: 437 NITNAIKVSNALEAGTVWVNCYNLLHHQIPFGGYKE 472


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +2

Query: 20   VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 193
            VN   P+ T   VLNS  P   + V    T   + +  + ST I  S  +++    T  T
Sbjct: 2742 VNTSTPI-TSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSST 2800

Query: 194  QTSVATPTEDGLEIYSST 247
              + +TP      + SST
Sbjct: 2801 VVNTSTPITSSTVVNSST 2818



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +2

Query: 20   VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 193
            VN   P+ T   VLNS  P   + V    T   + +  + ST I  S  +++    T  T
Sbjct: 2226 VNSSTPI-TSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSST 2284

Query: 194  QTSVATPTEDGLEIYSST 247
              + +TP      + SST
Sbjct: 2285 VVNTSTPITSSTVVNSST 2302



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +2

Query: 20   VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 193
            +N   P+ T   VLN+  P   + V    T   + +  + ST I  S  +++    T  T
Sbjct: 990  LNSSTPI-TSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSST 1048

Query: 194  QTSVATPTEDGLEIYSST 247
              + +TP      + SST
Sbjct: 1049 VVNTSTPITSSTVVNSST 1066



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +2

Query: 20   VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 193
            +N   P+ T   VLNS  P   + V    T   + +  + ST I  S  +++    T  T
Sbjct: 1098 LNSSTPI-TSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSST 1156

Query: 194  QTSVATPTEDGLEIYSST 247
              + +TP      + SST
Sbjct: 1157 VVNTSTPITSSTVVNSST 1174



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +2

Query: 20   VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 193
            VN   P+ T   VLNS  P   + V    T   + +  + ST I  S  +++    T  T
Sbjct: 2334 VNTSTPI-TSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSST 2392

Query: 194  QTSVATPTEDGLEIYSST 247
              + +TP      + SST
Sbjct: 2393 VVNTSTPITSSSVLNSST 2410


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 29  EKPLLTIDEVLNSPKRKTLVRQDMTVQ 109
           EKP   I EVL   KRK +  +  TV+
Sbjct: 646 EKPKTEISEVLPEEKRKAICDESQTVR 672


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 148 FNYSAYIGS*VSWLNCHILPYESFPFGGIEDFVNGQ*GFFF 26
           F ++A +G  +S L C +  +++    GIE  + G  G FF
Sbjct: 23  FIFAAIVGMNLSLLYCLLKGWKNVMIWGIETMLFGAIGIFF 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,614
Number of Sequences: 5004
Number of extensions: 66018
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)