Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1106
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   7.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 455 IGKRIPTNCEFEIGVNKAGRIQNLKNTFYQDGGCSFNEVLTP 580
           +G ++P  C F   VN A R++            S  E+L+P
Sbjct: 531 VGLKMPRYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSP 572


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 374 ACAAALVTRFLGRTCRFILPLQTNMK---AIGKRIPTNCEFEIGVNKAGRIQNL 526
           AC+  L  +  G+  R  + + T M     +GK++P  C F   V  A + ++L
Sbjct: 569 ACSHHLTHK--GKPIRMRIGIHTGMVLAGVVGKKMPRYCLFGHNVTLANKFESL 620


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 742 VKCDHFHNLFYHCY 701
           + C  F   F+HCY
Sbjct: 417 LSCSSFFQQFFHCY 430


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 377 CAAALVTRFLGRTCRFILPLQTNMKAIGKRIPTNCEFEIGVNKAGRI 517
           C   +    LG+  R    + ++MK++G+ +    +FE    KA R+
Sbjct: 180 CVVKIPRWDLGKFHRVCTQIGSSMKSVGEVMAIGRKFEEAFQKALRM 226


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -2

Query: 577 GEDFIKGTSTVLIKCIFEILNSTSFVYANLKLTIGRYTFAY 455
           G  F+ GT+T+ +     +  +++ + A+++  +G + F Y
Sbjct: 166 GGGFMSGTATLDVYNADIMAATSNVIIASMQYRVGAFGFLY 206


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -2

Query: 577 GEDFIKGTSTVLIKCIFEILNSTSFVYANLKLTIGRYTFAY 455
           G  F+ GT+T+ +     +  +++ + A+++  +G + F Y
Sbjct: 166 GGGFMSGTATLDVYNADIMAATSNVIIASMQYRVGAFGFLY 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,033
Number of Sequences: 438
Number of extensions: 4558
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)