Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1103
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   3.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   3.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   3.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   3.6  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   3.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   3.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.6  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 112 NYCNSSHQQCCYLA--IRKFPQH*KI*LFYNNYP 17
           NY N++++Q CY    I + P    + ++Y N+P
Sbjct: 93  NYNNNNYKQLCYNINYIEQIPV--PVPVYYGNFP 124


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 112 NYCNSSHQQCCYLA--IRKFPQH*KI*LFYNNYP 17
           NY N++++Q CY    I + P    + ++Y N+P
Sbjct: 93  NYNNNNYKQLCYNINYIEQIPV--PVPVYYGNFP 124


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 112 NYCNSSHQQCCYLA--IRKFPQH*KI*LFYNNYP 17
           NY N++++Q CY    I + P    + ++Y N+P
Sbjct: 93  NYNNNNYKQLCYNINYIEQIPV--PVPVYYGNFP 124


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 112 NYCNSSHQQCCYLA--IRKFPQH*KI*LFYNNYP 17
           NY N++++Q CY    I + P    + ++Y N+P
Sbjct: 93  NYNNNNYKQLCYNINYIEQIPV--PVPVYYGNFP 124


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 112 NYCNSSHQQCCYLA--IRKFPQH*KI*LFYNNYP 17
           NY N++++Q CY    I + P    + ++Y N+P
Sbjct: 93  NYNNNNYKQLCYNINHIEQIPV--PVPVYYGNFP 124


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 112 NYCNSSHQQCCYLA--IRKFPQH*KI*LFYNNYP 17
           NY N++++Q CY    I + P    + ++Y N+P
Sbjct: 93  NYNNNNYKQLCYNINYIEQIPV--PVPVYYGNFP 124


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 139 TAFFIMSRPNYCNSSHQQCCYLAIRK 62
           T F ++    YCNS+   C Y    K
Sbjct: 42  TVFSVLFWLGYCNSAINPCIYALFSK 67


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 139 TAFFIMSRPNYCNSSHQQCCYLAIRK 62
           T F ++    YCNS+   C Y    K
Sbjct: 490 TVFSVLFWLGYCNSAINPCIYALFSK 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,444
Number of Sequences: 438
Number of extensions: 4688
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)