Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1102
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    27   3.2  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    25   7.4  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.4  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   9.7  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 469 EGSPPSRPRHGCTPRTFFHWSFLY 398
           E + PSRPR+    +TF++  +LY
Sbjct: 121 ESADPSRPRNAVDQKTFWYALYLY 144


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -3

Query: 442 HGCTPRTFFHWSFL------YCPSYPKH*EHFLISKAAFEVYCFHHDSKLELFR 299
           +G   RTF  W+ L      YC  +  + + + + +  + + CFH  S+  LFR
Sbjct: 49  NGLQGRTFGIWTLLSAIVRFYCAYHITNPDVYFLCQCTYYLACFHFLSEWLLFR 102


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 447 GREGGLPSASARPGYPVHI 503
           G  GGL S  A P YP HI
Sbjct: 522 GSLGGLESTPAYPSYPSHI 540


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 127 FLVYLIRETGCQINEGDVCTEAYTNSA 207
           FL+ LIR TG  +  G V T AY N A
Sbjct: 323 FLIDLIRSTGLDLQVGIVQT-AYANGA 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,849
Number of Sequences: 5004
Number of extensions: 51547
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)