Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1102
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0259 + 15937549-15938307,15938393-15938767 35 0.050
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563... 33 0.20
01_07_0108 - 41126074-41127342 31 0.62
10_01_0029 - 369791-370637,370704-371218 29 3.3
07_03_1290 + 25537973-25538962 29 3.3
11_01_0124 + 975921-976589,1010229-1011290 29 4.4
08_02_1012 + 23550314-23551504 29 4.4
06_01_1098 - 9017236-9018660 29 4.4
03_04_0249 - 19341182-19342237,19342284-19342505 29 4.4
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224... 29 4.4
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130... 29 4.4
01_01_0038 + 288522-288572,289395-289512,289790-289809,290077-29... 28 5.8
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501 28 7.6
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089... 28 7.6
>03_03_0259 + 15937549-15938307,15938393-15938767
Length = 377
Score = 35.1 bits (77), Expect = 0.050
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 496 TGYPGRAEAEGSPPSRPRHGCTPRTFFHWSFLYCPSYP 383
+ +PG + + PP P HG P FFH + Y P
Sbjct: 322 SSHPGASSSSAPPPPPPPHGYDPNAFFHSQYAYFGMQP 359
>05_05_0285 -
23855219-23855371,23855391-23856063,23856239-23856301,
23856478-23856604,23856751-23856897,23856968-23856974,
23857203-23857379
Length = 448
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +1
Query: 169 EGDVCT-EAYTNSAGKCTPADTCRSAKEDFVQNGIRPTFCAYTTFGIALVCCRD-GSSIL 342
+G V T E+Y++ G+ T A A E ++G+ CA+ + + C D G +L
Sbjct: 288 KGSVWTSESYSSRTGRWTIAKDAPPAVEVKAESGVGTLGCAFWRTSLGSILCYDPGKDLL 347
Query: 343 QT-PPSRLESAPNVWD 387
+ P R+ + VW+
Sbjct: 348 KVIPAPRVVNQDTVWE 363
>01_07_0108 - 41126074-41127342
Length = 422
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 172 GDVCT-EAYTNSAGKCTPADTCRSAKEDFVQNGIRPTFCAYTTFGIALVCCRDGSSILQT 348
G+ CT Y G+C P D R+A NG P + TF A+ C GS +
Sbjct: 113 GNKCTAHPYNGVTGRCAPGDLTRTALAADATNGSNPLY--PVTFP-AVASCAPGSLLASL 169
Query: 349 P 351
P
Sbjct: 170 P 170
>10_01_0029 - 369791-370637,370704-371218
Length = 453
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 517 RISPPIWTGYPGRAEAEGSPPSRPRHGCTPRTFFHWSFLYCPSYP 383
R++P + +PG A + +PP P HG P FFH + Y P
Sbjct: 324 RVAP---SSHPG-ASSSSAPP--PPHGYDPNAFFHPQYAYFGMQP 362
>07_03_1290 + 25537973-25538962
Length = 329
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 639 AAPAGEGVGAFEISPTYGGHMREFPVISVLSADNQFDSGVI 517
A GEG GAF+ + + G +RE I + +AD F+ G I
Sbjct: 52 AVGVGEGDGAFDFAFGFSGQLRESTPI-LAAADELFEGGRI 91
>11_01_0124 + 975921-976589,1010229-1011290
Length = 576
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 496 TGYPGRAEAEGSPPSRPRHGCTPRTFFHWSFLYCPSYP 383
+ +PG A + +PP P HG P FFH + Y P
Sbjct: 450 SSHPG-ASSSSAPP--PPHGYDPNAFFHPQYAYFGMQP 484
>08_02_1012 + 23550314-23551504
Length = 396
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 511 SPPIWTGYPGRAEAEGSPPSRPRHGCTPR 425
SPP P A A +PP+RP+ G PR
Sbjct: 174 SPPPVPAAPEVASAVSTPPARPKRGRPPR 202
>06_01_1098 - 9017236-9018660
Length = 474
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 496 TGYPGRAEAEGSPPSRPRHGCTPRTFFHWSFLYCPSYP 383
+ +PG A + +PP P HG P FFH + Y P
Sbjct: 348 SSHPG-ASSSSAPP--PPHGYDPNVFFHPQYAYFGMQP 382
>03_04_0249 - 19341182-19342237,19342284-19342505
Length = 425
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 496 TGYPGRAEAEGSPPSRPRHGCTPRTFFHWSFLYCPSYP 383
+ +PG A + +PP P HG P FFH + Y P
Sbjct: 333 SSHPG-ASSSSAPP--PPHGYDPNAFFHPQYAYFGMQP 367
>02_01_0327 -
2241228-2242509,2243227-2243247,2243299-2243614,
2244232-2244496,2245887-2245985
Length = 660
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 478 AEAEGSPPSRPRHGCTPRTFFHWSFLYCPSY 386
A G PP+ PR G T +HW L P Y
Sbjct: 394 ALVHGLPPAPPRGGATIIEDWHWRSLTAPPY 424
>02_01_0193 -
1305109-1305249,1305677-1305835,1305922-1305969,
1306621-1306752,1306842-1306896,1307600-1307649,
1307822-1307917,1308001-1308078,1308169-1308243,
1308648-1308764,1308843-1308911,1309035-1309358,
1309534-1309587,1309688-1309747
Length = 485
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 561 ISVLSADNQFDSGVIA-FRRRYGQDIRVGQKRKVVHLLDH 445
+ VL + G I F+R +G+D +V + KVV + DH
Sbjct: 69 VDVLMTHDVCGPGTIGIFKREFGEDAKVWDREKVVIIPDH 108
>01_01_0038 +
288522-288572,289395-289512,289790-289809,290077-290109,
290648-290779,290859-290948,291402-291527
Length = 189
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 463 SPPSRPRHGCTPRTFFHWSFLYCPSYPKH*EHFLISKAAFEVYCFH 326
+P +RP T + + S K+ +FL SK F VYCFH
Sbjct: 6 APSARPSTSAT-KGLITGGVILLVSSRKNSHNFLFSKDLFFVYCFH 50
>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
Length = 506
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 386 IRRAIQKGPVKESARSTAVAWSRRW 460
+RR + + PVK++AR+ A+ SRRW
Sbjct: 61 LRRVVSRLPVKDAARTAAL--SRRW 83
>03_05_0530 -
25306788-25306919,25307446-25308037,25308152-25308975,
25309533-25309592,25310115-25310180,25310318-25310461,
25310616-25310756,25310898-25311056,25311818-25311884,
25311986-25312158,25312237-25312333,25312410-25312528,
25312867-25312951,25313120-25313321,25314456-25314633
Length = 1012
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Frame = -1
Query: 657 ESGTDEAAPAGEGVGAFEISPTYGGHMRE------FPVISVLSADNQFDSGVIAFRRRY- 499
+ G DEA+ G + +YG H+R FPV++ + + +G+++ +
Sbjct: 420 KDGRDEASEGGRFQHRICLCWSYGSHIRSFCHMAAFPVLASSAGSTKMMAGILSANLEWR 479
Query: 498 GQD---IRVGQKRKVVH-LLDHATAVLLALSFTGPF 403
G D +R VH L+DH + L PF
Sbjct: 480 GMDESRHMAADRRLGVHFLVDHCNVIKKELLSVDPF 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,689,297
Number of Sequences: 37544
Number of extensions: 374893
Number of successful extensions: 1146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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