Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1102
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    28   5.1  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter...    27   9.0  

>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -1

Query: 486  RVGQKRKVVHLLDHATAVLLALSFTGPFCIARRIPNI 376
            ++G+  +V   +   TA++L LS T PF +AR++PN+
Sbjct: 1510 QLGRALRVYREVSSKTAIVLLLSDTDPFRLARKLPNL 1546


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +1

Query: 166 NEGDVCTEAYTNS----AGKCTPADTCRSAKEDFVQNGIRPTFCAYTTFGIALVCCRDGS 333
           N  + CT + ++S    AG+    D+        V      +FC Y++ G   VCCR  S
Sbjct: 609 NVNNFCTTSSSSSNLCSAGQTVQLDSSNQPINCLVSTCPNNSFCQYSSSGQRYVCCRSTS 668


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 538 IVGGENANNGEFPHMAAIGWTNFEGSYTFSCGGSLISPRFVL 663
           I+ G +AN+ +   +A++  T F    T  CGG LI+P  V+
Sbjct: 17  IINGFSANSFDTLSLASV-ITRFPDGTTNVCGGVLIAPSIVI 57


>U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 2 protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -3

Query: 505 PIWTGYPGRAEAEGSPPSRPRHGCTP-RTFFHWSFLYCPSYPK 380
           P   G PG   A G P + P   C P R F     L CP  P+
Sbjct: 134 PALPGAPGPDGAPGRPGTTPNASCIPERVFEPPPCLPCPQGPR 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,138
Number of Sequences: 27780
Number of extensions: 316251
Number of successful extensions: 836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)