Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1102
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    36   3e-04
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 21/50 (42%), Positives = 25/50 (50%)
 Frame = +1

Query: 514 CDYTGIKLIVGGENANNGEFPHMAAIGWTNFEGSYTFSCGGSLISPRFVL 663
           C +     IVGG N    EFP MA I  T   G     CG ++IS R+VL
Sbjct: 153 CGWKNPSRIVGGTNTGINEFPMMAGIKRTYEPG---MICGATIISKRYVL 199


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 654 SGTDEAAPAGEGVGAFEISPTYGGH 580
           SG+  A+PA  GV   E S + GG+
Sbjct: 238 SGSLPASPADSGVSDVESSTSSGGN 262


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 68  KFNCAQTVCPCHA*RNS 18
           KF C++T  PC   RNS
Sbjct: 97  KFECSKTSNPCLPHRNS 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,163
Number of Sequences: 438
Number of extensions: 3692
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)