Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1101
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   2.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   3.6  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   4.8  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   4.8  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   8.4  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    25   8.4  

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 381 RSTTLMPPPTQSNVSVLTVQQLPHP 307
           RSTT +P P+ SNVSV T      P
Sbjct: 138 RSTTALPNPSLSNVSVSTTNLASKP 162


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 399 SYQNP*RSTTLMPPPTQSNVSVLTVQQLPHP-TNRNA 292
           SY N   S  +M  P Q + SV     + HP TN NA
Sbjct: 128 SYMNSQASPNIMNAPLQRDTSVPPAPSMVHPHTNTNA 164


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 481 AKDFFIRESNRYFFYNLDV*TSSPGVKQLPEPIEIYNVNASTHPE 347
           ++DF + E N  F  +    T++P  K        YN +   HPE
Sbjct: 68  SRDFSLNEMNNEFITDSFFCTTTPDPKTESPSFVKYNAHCDDHPE 112


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 79  YALLVNTVKALHSYRSREYGKARLQRIYSVGYLHVGILFINRVC 210
           +  L ++V     Y SR    ARL  ++S+ YLHV I F+   C
Sbjct: 165 FIALAHSVVLHKKYASRLETSARLGFLWSIVYLHV-IWFLYYAC 207


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 10  GCRNSARGWVMLL*RHQCHVTASYALLVNTVKA 108
           G   S R W       + HVT +Y L VNTV+A
Sbjct: 319 GTDGSIRRWRNKDLVEETHVTGNYDLTVNTVQA 351


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 325 TTTAPPYKPKRITAEAGRVVVPTRADSQDVLTP 227
           T++A   +P+R+   A +   PT+ D+Q    P
Sbjct: 383 TSSAQQQQPQRVEQPAPQTTQPTQVDTQQAAKP 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,785
Number of Sequences: 5004
Number of extensions: 57010
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)