Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1098
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      104   7e-25
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    24   1.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  104 bits (250), Expect = 7e-25
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 17/229 (7%)
 Frame = +1

Query: 16  AQSGTGKTATFSISILQTL---------DTTLRETQVLILSPTRELATQIQKVILALGDF 168
           AQ+G+GKTA F++ I+ TL          +T  E QV+I+SPTREL  QI + I+     
Sbjct: 240 AQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLN 299

Query: 169 MNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEM 348
             ++     GGT++     KL  G H++  TPGR+ D + +  ++  S++ LVLDEAD M
Sbjct: 300 SILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRM 359

Query: 349 LNKGFK---EQIYDVYRYLP-PATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTL 516
           L+ GF    E++ D    +P    Q ++ SAT P E+  +  +F+ + + + V       
Sbjct: 360 LDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGAC 419

Query: 517 EGIKQFFVAVEREEWKFDTLCDLY----DTLTITQAVIFCNTKRKVDWL 651
             ++Q F  V R + K D L ++     D+ T+   ++F   K+K D++
Sbjct: 420 SDVEQNFYEVARNK-KKDLLKEILERENDSGTLGGTLVFVEMKKKADFI 467


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 606 GNCQCIIEVTKCVKLPFFSFNCHEELFDTLQ 514
           G C  II++   ++LPF   N  +  F  LQ
Sbjct: 12  GFCHSIIQIPVIIQLPFCGPNVIDHYFRDLQ 42


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 113 RPVNWLLRFRK*Y*LLEIS*TFNVMLVLEVPILEKI*GNWITDSMLC 253
           RP N+LL        L +S     +LV+ + +L +I GNW   +++C
Sbjct: 74  RPCNYLLVS------LAVSDLCVALLVMPMALLYEISGNWSFGTIMC 114


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 16  AQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELAT 132
           A+ G G           TLDT LRE Q  +   ++  +T
Sbjct: 55  AEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTST 93


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 388 RYLPPATQVVLISATLPHEIL 450
           RY+ PA+QV + +A +  +I+
Sbjct: 620 RYISPASQVCIAAALIALQIV 640


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 388 RYLPPATQVVLISATLPHEIL 450
           RY+ PA+QV + +A +  +I+
Sbjct: 710 RYISPASQVCIAAALIALQIV 730


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,142
Number of Sequences: 438
Number of extensions: 3947
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)