Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1096
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.0  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   1.8  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    25   7.1  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   7.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   7.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   7.1  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    25   7.1  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.4  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    24   9.4  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 17  TRVGWI*EHLPLLTSFLTRCQTKQETKIT*SHYVVFHSHLTLVLL 151
           +R+ W+  HL LL ++L   + +++ +   S YVV    + L LL
Sbjct: 705 SRLDWLDIHLFLLDNYLIMAKARKDKRTNASRYVVSKRPIPLDLL 749


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 85  TRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVD 180
           T   N +K + GLP+ P F   K+R+  D  +
Sbjct: 543 TNISNAMKAVNGLPIHPLFKKSKIRYAPDRCE 574


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 7   GIRHEGWLDMRTSSTIDK 60
           G+ HE  LD+R SS  DK
Sbjct: 226 GVLHEALLDLRVSSRSDK 243


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 106 LGNFCFLFCLAPCQEACQ 53
           LGN C++ C+  C  AC+
Sbjct: 77  LGNTCYMNCVLQCLFACK 94


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 286 DVTNASRTMLMNIENLNWDPLLLRFFEVPKSVL 384
           D     + ++ + ENLNW+  +L  F+ PK ++
Sbjct: 294 DTVLMGKAIVSSFENLNWE-AMLSMFDNPKFMI 325


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -2

Query: 205 PSSWHSLQDQ-HCH*AISA*QH*SKVRVEDHIMALGNFCFLFCLAPCQEACQ*WKMFSYP 29
           PS W+   +  H    IS  Q  S V ++  + + GN  +   +AP +        F   
Sbjct: 195 PSDWNQQNNGGHLSGVISITQDVSSVPLQSSVFSSGNHAYHASMAPKRSGSWRHTNFHST 254

Query: 28  ANPRA 14
           ++PRA
Sbjct: 255 SHPRA 259


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = +1

Query: 4   AGIRHEGWLDMRTSSTIDKLLDTV---PNKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDN 174
           AG  + G  D+  +    KL+D     P + +  N         LSP  S    +WLS +
Sbjct: 535 AGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNEYHSEVYTTLSPMLSVSAKKWLSKH 594

Query: 175 VDPV 186
             P+
Sbjct: 595 TSPI 598


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 365 KCLSPSYQTLNPVQR 409
           +CL PSY+T+ P ++
Sbjct: 359 QCLPPSYETMGPCEK 373


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 72  RVKKLVNSGRCSHIQPTLVPNSC 4
           R+ K     RC HI   L P+ C
Sbjct: 81  RIAKSFERRRCGHIDEALSPSEC 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,971
Number of Sequences: 5004
Number of extensions: 38533
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)