Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1096
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 134 3e-32
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 31 0.32
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629... 29 2.3
08_02_1387 - 26648977-26649408 27 5.3
06_03_1139 + 27925970-27925985,27926427-27927079 27 5.3
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253... 27 5.3
02_02_0594 - 11967401-11967832 27 5.3
04_04_0092 - 22759791-22760676,22761446-22761813,22762202-227622... 27 7.0
04_04_0089 - 22724971-22725035,22725403-22725466,22725602-227256... 27 7.0
11_03_0005 - 8871625-8872616,8872807-8872933,8873466-8874209,887... 27 9.2
06_03_1138 - 27913795-27914274 27 9.2
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 134 bits (324), Expect = 3e-32
Identities = 70/151 (46%), Positives = 92/151 (60%), Gaps = 10/151 (6%)
Frame = +1
Query: 25 WLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVDPVKNAMKK 204
W+D RTS +L + + + CGL +S YFSA+K+ WL +NVD VKNA++
Sbjct: 108 WMDARTSPICRRLESDLSG---GRTHFVETCGLAISTYFSALKVLWLIENVDAVKNAVRA 164
Query: 205 GTCRFGTVDCWIIWNLTGGPNG---------GKHVTDVTNASRTMLMNIENLNWDPLLLR 357
G FGT+D W+IWNLTGG G G HVTD +NASRTMLMN++ L+WD L
Sbjct: 165 GDALFGTIDTWLIWNLTGGIGGTDRDGNKVFGHHVTDCSNASRTMLMNLKALDWDKPTLE 224
Query: 358 FFEVPKSVLPDIKSSSEVYGYIADG-PLKGV 447
+P +LP I S+SE G +A+G PL GV
Sbjct: 225 TLGIPAEILPKIISNSERIGVVANGFPLAGV 255
>10_06_0130 -
11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 31.5 bits (68), Expect = 0.32
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 1 AAGIRHEGWLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDN 174
AAG W ++ T + +L T+ ++ L L LPLSP S + L W + +
Sbjct: 13 AAGAAATSWPELLTPFDLSRLRATLASRPLTPRRLGRLLALPLSPATSLLLLTWYASS 70
>11_06_0180 + 20962420-20962528,20962618-20962699,20962831-20962948,
20963024-20963062,20963181-20963343,20963706-20963921,
20964039-20964116,20964244-20964500,20964544-20964575,
20964815-20965197,20965262-20965831,20966250-20966343,
20966365-20966541,20966761-20966963,20968244-20968301,
20969126-20969381,20969553-20969789
Length = 1023
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 22 GWLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLS-PYFSAVKLRWLSDNVDPVKNAM 198
GW MR + ++ + T N T + + LPL+ P F + WL D+ +
Sbjct: 835 GWSGMRGTDALNFIFFTYWNATEKRLAIGHSQCLPLNEPSFHS----WLYDSHKKMVKEH 890
Query: 199 KKGTCRFGTVDCWIIW 246
++G T+ W IW
Sbjct: 891 RRGFDTIATLVAWTIW 906
>08_02_1387 - 26648977-26649408
Length = 143
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 391 IKSSSEVYGYIADGPLK 441
++ + E YGY+ADGPL+
Sbjct: 72 LEEAEEEYGYVADGPLE 88
>06_03_1139 + 27925970-27925985,27926427-27927079
Length = 222
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +1
Query: 49 TIDKLLDTVPNKTRNKNYLKPLCGLP-LSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGT 225
TID LL P + + GL + P+ L WL D V A ++G
Sbjct: 140 TIDHLLVACPESRQLWWFALRAIGLSDILPFNEPSFLLWLCDKRVKVAKAQRRGFDTIAP 199
Query: 226 VDCWIIW 246
+ W IW
Sbjct: 200 LIAWTIW 206
>06_03_0540 -
21923763-21923945,21924027-21924776,21924895-21925323,
21925509-21925619,21925715-21926040,21926130-21926251,
21926905-21927020,21927119-21927243,21927338-21927596
Length = 806
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 304 RTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSSEVY 414
R +++ +LNW +LR +VP +VL + S V+
Sbjct: 153 RNLVVGSTSLNWFKRILRLRDVPSTVLKAMPCSCNVF 189
>02_02_0594 - 11967401-11967832
Length = 143
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 391 IKSSSEVYGYIADGPLK 441
++ + E YGY+ADGPL+
Sbjct: 72 LEEAEEEYGYVADGPLE 88
>04_04_0092 -
22759791-22760676,22761446-22761813,22762202-22762207,
22763365-22763603,22764808-22765339
Length = 676
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 337 WDPL--LLRFFEVPKSVLPDIKSSSEVYGYIA 426
W P +L+ F V + P + S E+YGYIA
Sbjct: 201 WHPANGMLQIFSVKLAKTPVVDGSIELYGYIA 232
>04_04_0089 -
22724971-22725035,22725403-22725466,22725602-22725688,
22726775-22726789,22736269-22736685,22738235-22738473,
22739673-22740223,22740440-22740540
Length = 512
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 337 WDPL--LLRFFEVPKSVLPDIKSSSEVYGYIA 426
W P +L+ F V + P + S E+YGYIA
Sbjct: 241 WHPANSMLQIFSVKLAKTPVVDGSIELYGYIA 272
>11_03_0005 -
8871625-8872616,8872807-8872933,8873466-8874209,
8874287-8874328,8874898-8874993,8877589-8877662,
8877681-8878344
Length = 912
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 157 RWLSDNVDPVKNAMKKGTCRFGTVDCWIIWNLTGGPNGGKHVTDVTNASRTMLMNIENLN 336
RW S + V ++KK +V + L P+ G V+ V+ + +LMN+E+
Sbjct: 599 RWPSRKIKKVNRSLKKIQNVISSVH-GVEGVLKYDPSTGCLVSSVSPSIEPVLMNVEHKG 657
Query: 337 WDPL 348
DPL
Sbjct: 658 SDPL 661
>06_03_1138 - 27913795-27914274
Length = 159
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +1
Query: 49 TIDKLLDTVPNKTRNKNYLKPLCGLP-LSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGT 225
TID LL P + + GL + P+ + WL D V A ++G
Sbjct: 39 TIDHLLVACPESRQLWWFALRAIGLSDMLPFNEPSFISWLCDKRMKVAKAQRRGFDTITA 98
Query: 226 VDCWIIW 246
+ W IW
Sbjct: 99 LIAWTIW 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,797
Number of Sequences: 37544
Number of extensions: 246800
Number of successful extensions: 590
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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