Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1096
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.38 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.38 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   1.5  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   1.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   2.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   4.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.2  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = +1

Query: 25  WLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSAVKL--RWLSDNV 177
           WL +  +     L     +K    N  K    L  SPYF    L  R L+DNV
Sbjct: 437 WLRVNENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNV 489


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = +1

Query: 25  WLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSAVKL--RWLSDNV 177
           WL +  +     L     +K    N  K    L  SPYF    L  R L+DNV
Sbjct: 437 WLRVNENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNV 489


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 282 DMLPAIWTTCQVPYDPT 232
           D  P IW   +  YDPT
Sbjct: 95  DNKPEIWVLLEAKYDPT 111


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 282 DMLPAIWTTCQVPYDPT 232
           D  P IW   +  YDPT
Sbjct: 95  DNKPEIWVLLEAKYDPT 111


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 112 MALGNFCFLFCLAP 71
           +A+ NF  +FC++P
Sbjct: 94  LAISNFLMMFCMSP 107


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 44  LPLLTSFLTRCQTKQETKIT*SHYVVF 124
           LP+ TS+ +    +QE K + SHY ++
Sbjct: 439 LPVHTSYKSGLNLEQEKKDSISHYHLY 465


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 243 MELDRWSKWREAC---H*CHQCIENNVNE 320
           ++ DR S  RE     H  H CIEN++ +
Sbjct: 78  IDSDRHSTTREIAEKLHVSHTCIENHLKQ 106


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 145 AVKLRWLSDNVD 180
           A+ LRWL DN +
Sbjct: 227 ALALRWLRDNAE 238


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 285 SDMLPAIWTTCQVPYDPTI 229
           S+++ AI    Q P+DP +
Sbjct: 765 SELVEAILKRVQTPFDPDV 783


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 145 AVKLRWLSDNVD 180
           A+ LRWL DN +
Sbjct: 227 ALALRWLRDNAE 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,108
Number of Sequences: 438
Number of extensions: 2632
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)