Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1095
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.2  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   6.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 63  HGALVSNYQFKNVYDNTILFYKLL 134
           HGA+  N   K +YD+ +  Y  L
Sbjct: 20  HGAVAGNPDAKRLYDDLLSNYNKL 43


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 63  HGALVSNYQFKNVYDNTILFYKLL 134
           HGA+  N   K +YD+ +  Y  L
Sbjct: 20  HGAVAGNPDAKRLYDDLLSNYNKL 43


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 305 LGNVRDETFFLIL*TYGHVLQAYLSAASGPSST 207
           +  V  E  F  L T+   LQA L+ AS P+ST
Sbjct: 61  MAGVTGEEPFDTLDTFLRELQADLAEASQPTST 93


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +1

Query: 91  LKTFMIILFCSISYL 135
           +K  +++LFC+++Y+
Sbjct: 1   MKFIVLVLFCAVAYV 15


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 66  GALVSNYQFKNVYDNTILFYKLL 134
           G  +S+Y+F+++ + TIL  +L+
Sbjct: 367 GEDISDYKFRHITEITILTVQLI 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,234
Number of Sequences: 438
Number of extensions: 3318
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)