Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1091
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    30   0.25 
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.8  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   2.4  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    26   4.1  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   5.5  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   5.5  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   7.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   7.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.5  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   9.5  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 459 DGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGML 599
           D D  +       ++S F+  +V+   PF  L KRFGA   L   ML
Sbjct: 88  DKDLGFVGDQYNIMISIFYIPFVLCAFPFSYLYKRFGAARILPFFML 134


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/73 (23%), Positives = 36/73 (49%)
 Frame = +3

Query: 432 NKTSVVSTQDGDYAWDSSLQGYILSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSV 611
           N  +V+     D   +  +  +  ++F+ GY++ + P  +L +RF     L V ++I   
Sbjct: 83  NSYAVIMGLKEDLKMEGQMYSWSGTAFYLGYLVFEFPASLLLQRFPLSKTLCVFLVI--- 139

Query: 612 FGLLVPVAAEAGY 650
           +G L+ + + A Y
Sbjct: 140 WGFLLCMTSVANY 152


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 275 NSALGYVHAVSRNGKRLHHEDEHVG 349
           NS+LGY  +++R+ K + +  EH+G
Sbjct: 92  NSSLGYAPSITRSIKSISNNTEHLG 116


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 501 LSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAE 641
           ++ F  GY+   I +  LS+  G +L L +GM    +F + V VA +
Sbjct: 176 MTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKD 222


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 501 LSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAE 641
           +S +  G+    I +  +S+  G ++ L VGM + S+F + V VA +
Sbjct: 139 MSLYVCGFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKD 185


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 441 SVVSTQDGDYAWDSSLQGYILSSF 512
           S V+TQD D  W SS+  Y L+ F
Sbjct: 159 SGVATQDLDVQWVSSISWYFLNLF 182


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 501 LSSFFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLLVPVAAE 641
           +S F  GY +  I +  +S+  G +  L +G+ + SVF + V  A +
Sbjct: 180 VSLFMLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQD 226


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 14  PQSASVPSRATLAMSPLGRFSTPDVGPLTNIT*VAARRTL 133
           P++A+  S  T      GRFS    G + NIT +AA  TL
Sbjct: 150 PKNANSSSTCTRTPPTSGRFSIRHDGQVCNIT-IAAEETL 188


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -3

Query: 234 VQVVPKRARGLLES--WTPW*RGKRVKNPKSN*IL*SVRRAATYVMLVSGPTSGVEKRPR 61
           +Q V K+A G+ ES   T   + K +    S     S  +A   +++  GP  G++ RP+
Sbjct: 715 LQRVAKKAEGISESGDMTESEKAKEISRLVSR-ATKSKPKAKPTLVVAKGPNKGLKSRPK 773

Query: 60  G 58
           G
Sbjct: 774 G 774


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 275 NSALGYVHAVSRNGKRLHHEDEHVGRHRCYGQPHSSYCH 391
           +S +   +  S NG  L H+ E +   + Y + H +YCH
Sbjct: 12  SSLVSSKNMTSENG--LEHQFEELLVEKQYSEEHCAYCH 48


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 480  SSLQGYILSSFFYGYVITQI-PFGILSKRFGARLFLGVGMLINSV 611
            + L  YI S   +  + ++  PFG+++  FG +  LG+G  +  +
Sbjct: 1505 TQLPSYIFSGADFALIPSRDEPFGLVAVEFGRKGTLGIGAKVGGL 1549


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 510 FFYGYVITQIPFGILSKRFGARLFLGVGMLINSVFGLL 623
           F  GY+I Q+P     +R  ARL+  V   +N ++GL+
Sbjct: 76  FTCGYIIGQLPGSYALQRVPARLWFSV---MNILWGLM 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,572
Number of Sequences: 5004
Number of extensions: 54878
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)