Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1091
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             30   0.022
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.84 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.9 bits (64), Expect = 0.022
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +2

Query: 191  QDSRSPRARLGTTWTRRSTQPSLHWRAWNSALGYVHAVSRNGKRLHHEDEHVGRHRCYGQ 370
            Q++  P+   G   TR       ++   +S +  V AV R    +H    +      YG 
Sbjct: 1019 QEANKPKPATGGKGTRPKRGKYRNYDR-DSLVEAVRAVQRGEMSVHRAGSY------YGV 1071

Query: 371  PHSSYCHR*RDRHRMRP 421
            PHS+  ++ ++RH MRP
Sbjct: 1072 PHSTLEYKVKERHLMRP 1088


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 519 GYVITQIPFGILSKRFGA--RLFLGVGMLINSVFGLLVPV 632
           G ++  I FG+++ +FGA  +L +   M++N +   LV +
Sbjct: 242 GMIVFCITFGLVAGQFGAQGKLIVDFFMILNEIIMKLVGI 281


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 420 PVNPNKTSVVSTQDGDYAWDSSLQGYILSS--FFYGYVITQIPFGILSKRF 566
           P +  +   V  Q+ DY  D +   YILS   +++   I  I + ++S ++
Sbjct: 285 PFHTQRLLYVYAQESDYYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKY 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,543
Number of Sequences: 438
Number of extensions: 3678
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)