Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1090
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   3.4  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   3.4  
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    26   5.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.8  

>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 177 KYFMNHLSIKFSKKPFLFLIKSIYSNILLAMYTF 278
           KY +N+L +K   +PF     S+ S   +AMY F
Sbjct: 183 KYLINNLQLKCLDRPFEGDAHSLSSESFMAMYKF 216


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 182  FYESFEY*IFKEAIFVSYQINIFKYSFGYV--HIPNCFYALSLLKRISE*NYRIPI 343
            F ESFE  +  +    ++  N+F + FG    H+ +C     LL++  + NY IP+
Sbjct: 1085 FNESFEVELPCKQT-CNFVANVFDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPL 1139


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = -3

Query: 593  DMKYYSSVLNKLLDQFQISWSDGVPKPIK 507
            D + Y+ + NKL+D+ +++  +G+P  ++
Sbjct: 1296 DHRLYTRLDNKLIDEAEVTLEEGIPSVVE 1324


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 129 FLLYEQKSIYVCI*PLKYFMNHLSIKFSKKPFLFLIKSIY----SNILLAMYTFPI 284
           FL+Y QK        + + + HLS   S  PF+ +I S Y    + +L+  Y+F I
Sbjct: 692 FLMYIQKLPETFTLLIPHLLYHLSQATSTLPFVLMIVSSYQLLDNTVLMKDYSFTI 747


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 153 CFSVRIKENRQHLHTKNSSVLIHYCMNV 70
           CFSV   E+  ++  K  S ++H+C N+
Sbjct: 84  CFSVDAPESLDNVQEKWISEVLHFCSNL 111


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 295  LVTIKKNIRIELSNSHKVLLDTE-HYLEMPRYN*FSLSIL*DEPY*VSGKILIRCGNTDQ 471
            L+ +  N+   + NS  V  + E   + +PRY  F   I+  +PY   GK ++ C +  +
Sbjct: 2846 LLDMTSNVSEGIRNSTDVRTNPEIDKVRVPRYVEFGGLIVPFKPYESLGKYMLSCLDDGK 2905

Query: 472  FSQINYL 492
            ++   YL
Sbjct: 2906 YAFDEYL 2912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,422
Number of Sequences: 5004
Number of extensions: 64745
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)