Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1087
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    98   5e-23
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    41   9e-06
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    26   0.35 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 98.3 bits (234), Expect = 5e-23
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
 Frame = +2

Query: 146 VPGPFPLPIIGNAHQ-FVVRSTEFLGLLKSFTDKYGDVFRVHFFSYPYVLISHPKYAEAL 322
           +PGP  LP+IGNA   F      F  +LK   + + DV ++       + +  P+  E +
Sbjct: 44  IPGPPALPLIGNALDLFGSPDAMFSQVLKK-AENFKDVVKIWVGPKLVICLIDPRDVEII 102

Query: 323 VSSADLITKGRSYSFLKAWLGEGLLTASGPRWRLHRKFLTPAFHFNILQNFLPVFCKKSE 502
           +SS   I K   Y F K WLG+GLL ++G +WR HRK + P FH N+L++F+ +F   + 
Sbjct: 103 LSSNVYIDKSTEYRFFKPWLGDGLLISTGQKWRNHRKLIAPTFHLNVLKSFIDLFNANAR 162

Query: 503 ILRDKIRRLADGQPIDLFPITALAALDNVAESIMGVS 613
            + +K+R+  +G+  D     +   +D + E+ MGVS
Sbjct: 163 SVVEKMRK-ENGKEFDCHNYMSELTVDILLETAMGVS 198


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 41.1 bits (92), Expect = 9e-06
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 5/167 (2%)
 Frame = +2

Query: 146 VPGPFPLPIIGNAHQFVVRSTEFLGLLKSFTDKYGDVFRVHFFS--YPYVLISHPKYAEA 319
           V GP P+P  G     ++        +K   +KY +   V  ++   P++L++ P+  + 
Sbjct: 34  VVGPKPVPFFGTTKDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIKD 93

Query: 320 LV--SSADLITKGRSYSFLKAWLGEGLLTASGPRWRLHRKFLTPAFHFNILQNFLPVFCK 493
           ++    +    +G         L   LL     RWR  R  L+P F    L+    +  +
Sbjct: 94  ILIRDFSKFANRGLGVFERTEPLSPHLLNLEVERWRPLRSRLSPIFTSGKLKEMFYLIIE 153

Query: 494 KSEILRDKIRRLAD-GQPIDLFPITALAALDNVAESIMGVSVNAQQN 631
            S  L   + +L +  +PI+   +TA    D +     G+ +++  N
Sbjct: 154 CSLNLETYLDKLIEKNEPIECRELTARFTTDVIGSCAFGIDMSSMTN 200


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 140 SNVPGPFPLPIIG 178
           S VPGPF LPI G
Sbjct: 51  SKVPGPFSLPIFG 63


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 172 HWKCSSVRSEIHGISGTSQK 231
           +WK +  +SEI+ I G  +K
Sbjct: 10  NWKMNGTKSEINDIVGFLKK 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,249
Number of Sequences: 438
Number of extensions: 4169
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)