Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1085
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021176-1|AAH21176.1|  166|Homo sapiens zinc finger, CCHC domai...    30   8.6  
AB231861-1|BAE19679.1| 1950|Homo sapiens low-density lipoprotein...    30   8.6  
AB084910-1|BAD83615.1| 1905|Homo sapiens low density lipoprotein...    30   8.6  
AB011540-1|BAA32468.1| 1576|Homo sapiens MEGF7 protein.                30   8.6  

>BC021176-1|AAH21176.1|  166|Homo sapiens zinc finger, CCHC domain
           containing 13 protein.
          Length = 166

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +1

Query: 331 YTCSRS*PAS--CDTRSRRYRAHTYCCNRHNHGHNDCHTTQYCQC-SC 465
           Y C RS   +  C    R  R H Y C R  H   DC   +  +C SC
Sbjct: 68  YNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSC 115


>AB231861-1|BAE19679.1| 1950|Homo sapiens low-density lipoprotein
            receptor-related protein 4 protein.
          Length = 1950

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 509  QVVFGTCQFPYFYSGQEHWQYWVVWQS 429
            QV+ G    P+  + Q+ W YW  WQ+
Sbjct: 1595 QVLVGHVSHPFALTQQDRWIYWTDWQT 1621


>AB084910-1|BAD83615.1| 1905|Homo sapiens low density lipoprotein
            receptor-related protein 10 protein.
          Length = 1905

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 509  QVVFGTCQFPYFYSGQEHWQYWVVWQS 429
            QV+ G    P+  + Q+ W YW  WQ+
Sbjct: 1550 QVLVGHVSHPFALTQQDRWIYWTDWQT 1576


>AB011540-1|BAA32468.1| 1576|Homo sapiens MEGF7 protein.
          Length = 1576

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 509  QVVFGTCQFPYFYSGQEHWQYWVVWQS 429
            QV+ G    P+  + Q+ W YW  WQ+
Sbjct: 1221 QVLVGHVSHPFALTQQDRWIYWTDWQT 1247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,629,600
Number of Sequences: 237096
Number of extensions: 1426902
Number of successful extensions: 3194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3147
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)