Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1084
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     29   0.43 
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    29   0.75 
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.7  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.0  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   4.0  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   5.3  

>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 505 DFINCIYVFEVTTGMKFAHPDFILLRKSGHKEVRLACTNI*GKITTGFSNA 353
           D++N + V+    G++  + + ++LR +GH  V   C NI   I + F +A
Sbjct: 286 DYLNLVRVYTRPRGLEPDYSEPVILR-TGHSTVEDFCNNIHSSIKSQFKHA 335


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 636 LNSSIPLKMASRXVKPLSVFGPDNVSNVSGIKLL 535
           L+SS+  K+ +  +KP+ VFGP  V   + +K L
Sbjct: 5   LSSSVASKLVTLKLKPVVVFGPSGVGKSTLLKRL 38


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 452 GKLHACSDFKNIYAVDEVYYVDEIKDVLKSLM 547
           G  ++ SD+ ++Y VDE+   + +++ +K L+
Sbjct: 308 GTYYSISDYTDVYGVDELQLFESLENCIKPLV 339


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 2   TRDRRRCLFSVRYFRPYQNSCNLS 73
           T  R+ C + +RY RPY +S   S
Sbjct: 414 TNIRKECTYDIRYKRPYVSSLKYS 437


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 389 VSTGKSYLFVPRLPEEYEVWMGKL-HACSDFKNIYAVDEVYYVDE--IKDVLKSLMPETL 559
           ++TG  ++F+P  P E   W  +L ++ S  + +     +  V E  I   L  + PE +
Sbjct: 400 LATGADFVFIPERPAEVGKWQDELCNSLSSVRKLGKRKSIVIVAEGAIDSELNHISPEDI 459

Query: 560 LTL 568
             L
Sbjct: 460 KNL 462


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -1

Query: 571 RQCQQCFRHQTFEYIFYLINIIDFINCIYVFEVTTGMKFAHPDF 440
           R CQ+C  H  +     + +I  F N IY            PDF
Sbjct: 238 RSCQKCMEHFLYYGCLIIADIFQFHN-IYAMTTNAPNLLQDPDF 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,880
Number of Sequences: 5004
Number of extensions: 64887
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)