Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1081
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 429 YRINRGYTSNKLSITQNMATFFFIIAYGG 343
           Y ++RGY   K+   QN+ T   I+ Y G
Sbjct: 772 YELSRGYIDEKILENQNIIT-HMILNYVG 799


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 567 VCSYLYYSELTGHKL 611
           V + LYYS LT H L
Sbjct: 262 VTNNLYYSPLTSHSL 276


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 272 FKNPREWR*YRHR 234
           +KN RE+R YR R
Sbjct: 283 YKNEREYRKYRER 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,542
Number of Sequences: 438
Number of extensions: 4233
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)