Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1079
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    30   0.34 
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    30   0.34 
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    28   1.1  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   1.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.6  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.6  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   7.4  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 444 FVPRIIRIGNDTSLVVYSSKCHRTSFVKTRYCHKYPRFFT*PMLHIDINRHRGPRY 277
           FV ++   G   +  V S+K HRT  ++  Y H  P++      H ++  H  P +
Sbjct: 57  FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 444 FVPRIIRIGNDTSLVVYSSKCHRTSFVKTRYCHKYPRFFT*PMLHIDINRHRGPRY 277
           FV ++   G   +  V S+K HRT  ++  Y H  P++      H ++  H  P +
Sbjct: 57  FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -1

Query: 379 QDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 200
           ++ +RQNE  +   A  +     H +     T+ R+     H TGL   +T T   PI  
Sbjct: 60  EEKIRQNEQANTKFAFLHANDPYHPYYQHKLTEAREGKLKSHATGLSTQKTSTLARPIQK 119

Query: 199 P 197
           P
Sbjct: 120 P 120


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = -3

Query: 323 DLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTXEIILRVXRXGP 159
           D  C   S G E P   N F N+Y R  S  +  SS   C T   +   V    P
Sbjct: 85  DYLCKKVSKGPESPRV-NSFHNSYSRNQSPISRKSSCVTCSTVLPLEFSVPDVQP 138


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 120 RSIPYDISSLKASNS*GSYLIVNLQF 43
           RS P D+SS   S + GS+L  NL F
Sbjct: 478 RSSPRDLSSFSTSVNDGSFLFKNLMF 503


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 500  SSIATLNTEVSPPQFC 453
            SS+A +N EVSPP+ C
Sbjct: 1315 SSLARMNREVSPPKGC 1330


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 356 GIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLT 198
           G  T  ++ L  + C  +SIG     T  + +N+Y     F  TN S +  +T
Sbjct: 521 GSYTQTKEILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVT 573


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 271 IVSLMHMTGLLRSETRTPVPPIASP 197
           + S++ +T  L+S T +P PP++SP
Sbjct: 317 VSSVVSVTSPLQSCTNSPSPPLSSP 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,521
Number of Sequences: 5004
Number of extensions: 58996
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)