Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1073
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   2.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.7  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   4.7  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   4.7  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    24   8.2  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 126  SLSSLQRYRDDRLVSRYTSILSAVFTSTPFTTTNKVFFDSSRH*CCRCECAP 281
            SL  +Q     R V  +T +L  V   TPF     V F        R EC P
Sbjct: 1093 SLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRKECPP 1144


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 168 SRYTSILSAVFTSTPFTTTN 227
           S YT   S   TSTP TTTN
Sbjct: 512 SNYTISSSTPVTSTPVTTTN 531



 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 168 SRYTSILSAVFTSTPFTTTN 227
           S YT   S   TSTP TTTN
Sbjct: 571 SNYTISSSTPVTSTPVTTTN 590


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -2

Query: 349 RTSPRTVPMYF*TSLVEFRNATPGAHSQRQH*CLLLSKKTLFVVVNGVDVNTADRIDV*R 170
           R S RT+P     S    + A      Q +    L SK+   V +N +  N+ D +D+  
Sbjct: 283 RISLRTIPTQSCFSEKLLKAANLCVVQQVKQKVFLQSKQIFCVPINSLMANS-DSVDILE 341

Query: 169 LTRRSSLY 146
           LTR +  Y
Sbjct: 342 LTRNTDAY 349


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 401 HTYSSKSHRICCKYTSRSDVTPHCANV 321
           +TYSS+SH I   +  R++ T H + +
Sbjct: 328 NTYSSRSHAILQVFLIRNNPTAHTSQI 354


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 150 RDDRLVSRYTSILSAVFTSTPFTTTNK 230
           +DD+LV+     +S  FT +PF  T+K
Sbjct: 62  KDDKLVTLSYPQISKYFTFSPFEHTDK 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,596
Number of Sequences: 5004
Number of extensions: 27762
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)