Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1073
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109...    30   0.65 
03_05_0627 - 26240673-26241318,26241713-26242536                       29   1.5  
02_02_0124 + 7023890-7024486                                           27   4.6  

>07_01_0154 -
           1094256-1094672,1094954-1094977,1095867-1095891,
           1096014-1096304,1096391-1096470,1096953-1097052,
           1097143-1097204,1097650-1097750,1097940-1098117,
           1098298-1098924,1099014-1099100,1099804-1099905,
           1100265-1100348,1100580-1100657
          Length = 751

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 380 HRICCKYTSRSDVTPHCANVFLNFTCRVSQCYTGRAFTTAALMSTTIEENFIRRSK 213
           H +   Y    DV  HCA   L     V+QC+   +FT  ++    IE+   +R K
Sbjct: 478 HLVLVDYLISKDVGVHCAQYLLRCLRLVTQCW--HSFTDDSIYEAKIEKLNFKRQK 531


>03_05_0627 - 26240673-26241318,26241713-26242536
          Length = 489

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 353 RSDVTP-HCANVFLNFTCRVSQCYTGRAFTTAALMSTTIEENFI 225
           R+D+ P   A  FLNF+C     Y  R  TT    +TT   + I
Sbjct: 68  RADLLPLSLAGFFLNFSCHDYSEYFSRPTTTTTTTTTTCHRHLI 111


>02_02_0124 + 7023890-7024486
          Length = 198

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 159 DRLCTVAGMKASVSPRASTESDRHYNTAGGG 67
           D L  V G+   V  R +   DRHY   GGG
Sbjct: 69  DVLINVPGVARPVLARVADYCDRHYGGGGGG 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,442,284
Number of Sequences: 37544
Number of extensions: 212328
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)