Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1073
(416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006633-5|AAO21429.1| 506|Caenorhabditis elegans Prion-like-(q... 29 1.0
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 29 1.0
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 29 1.8
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 27 4.1
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 27 4.1
U21319-1|AAC46673.2| 258|Caenorhabditis elegans Hypothetical pr... 27 4.1
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 27 4.1
Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical p... 27 5.5
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 26 9.5
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 26 9.5
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 26 9.5
AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical ... 26 9.5
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 26 9.5
>AC006633-5|AAO21429.1| 506|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform b protein.
Length = 506
Score = 29.5 bits (63), Expect = 1.0
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +3
Query: 3 ASRIVDPRAAGVIAATLQTSTNRRRLYYNDDHFRYWLGDSRSLSSLQRYRDDRLVSRYTS 182
AS I D RAA A + + NR R+Y + G SRS+S + +D SR S
Sbjct: 312 ASAIPDLRAANAAARSSMHNRNRPRMYNPPPAVSHSQGPSRSVSRMS--QDSLFYSRPAS 369
Query: 183 I 185
I
Sbjct: 370 I 370
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 29.5 bits (63), Expect = 1.0
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +3
Query: 3 ASRIVDPRAAGVIAATLQTSTNRRRLYYNDDHFRYWLGDSRSLSSLQRYRDDRLVSRYTS 182
AS I D RAA A + + NR R+Y + G SRS+S + +D SR S
Sbjct: 312 ASAIPDLRAANAAARSSMHNRNRPRMYNPPPAVSHSQGPSRSVSRMS--QDSLFYSRPAS 369
Query: 183 I 185
I
Sbjct: 370 I 370
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 40 SLLHSRRVRTAAGCIIMTITFGTGSGTHARFHPCNGTETIAL*AVIRLSCQPCLHRRR 213
S+LH R R A GC T G + + C G + V R+ C PCL R++
Sbjct: 738 SVLHHREKRAAPGC-----TSGFSTMSQNSCGTC-GASNLRSPRVKRMGCLPCLGRKK 789
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 40 SLLHSRRVRTAAGCIIMTITFGTGSGTHARFHPCNGTETIAL*AVIRLSCQPCLHRRR 213
S+LH R R A GC T G + + C G + V R+ C PCL R++
Sbjct: 383 SVLHHREKRAAPGC-----TSGFSTMSQNSCGTC-GASNLRSPRVKRMGCLPCLGRKK 434
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 40 SLLHSRRVRTAAGCIIMTITFGTGSGTHARFHPCNGTETIAL*AVIRLSCQPCLHRRR 213
S+LH R R A GC T G + + C G + V R+ C PCL R++
Sbjct: 335 SVLHHREKRAAPGC-----TSGFSTMSQNSCGTC-GASNLRSPRVKRMGCLPCLGRKK 386
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 40 SLLHSRRVRTAAGCIIMTITFGTGSGTHARFHPCNGTETIAL*AVIRLSCQPCLHRRR 213
S+LH R R A GC T G + + C G + V R+ C PCL R++
Sbjct: 1063 SVLHHREKRAAPGC-----TSGFSTMSQNSCGTC-GASNLRSPRVKRMGCLPCLGRKK 1114
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 15 VDPRAA-GVIAATLQTSTNRR-RLYYNDDHF 101
+DP A+ G I TL+T++ LYY DDHF
Sbjct: 1125 LDPLASDGTITMTLRTTSKIGILLYYGDDHF 1155
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 147 TVAGMKASVSPRASTESDRHYNTAGGGSYSSGV*QRSR 34
T +G S +P AST S +T G S SSG SR
Sbjct: 531 TTSGSTVSTTPGASTTSGSTQSTTSGPSTSSGPSTASR 568
>U21319-1|AAC46673.2| 258|Caenorhabditis elegans Hypothetical
protein C30G12.4 protein.
Length = 258
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 67 TAAGCIIMTITFGTGSGTHA 126
TAAGC+ +T+T G+G +A
Sbjct: 184 TAAGCLTLTLTCTAGTGNYA 203
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 15 VDPRAA-GVIAATLQTSTNRR-RLYYNDDHF 101
+DP A+ G I TL+T++ LYY DDHF
Sbjct: 1125 LDPLASDGTITMTLRTTSKIGILLYYGDDHF 1155
>Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 27.1 bits (57), Expect = 5.5
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Frame = +3
Query: 57 TSTNRRRLYYNDDHFRYWLGDSRSLSSLQRY---RDDRLVSRY-------TSILSAVFTS 206
TS ++RRLYY D Y + S SL++L+ + DD + S++S+ TS
Sbjct: 167 TSLSQRRLYYEDSSETY-IPSSPSLTTLKDFMMTNDDETFDDFDFDNDDVKSVISSASTS 225
Query: 207 TPFTTTNKV 233
F+ N++
Sbjct: 226 RIFSVDNRM 234
>Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 27.1 bits (57), Expect = 5.5
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Frame = +3
Query: 57 TSTNRRRLYYNDDHFRYWLGDSRSLSSLQRY---RDDRLVSRY-------TSILSAVFTS 206
TS ++RRLYY D Y + S SL++L+ + DD + S++S+ TS
Sbjct: 167 TSLSQRRLYYEDSSETY-IPSSPSLTTLKDFMMTNDDETFDDFDFDNDDVKSVISSASTS 225
Query: 207 TPFTTTNKV 233
F+ N++
Sbjct: 226 RIFSVDNRM 234
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 7 LE*WIPGLQA*SLLHSRRVRTAAGCIIMTITFGTGSGTHARFHPCNGTETIAL*AVI 177
+E W+PG + + S T + I + T GT H CNGT + A+I
Sbjct: 345 IEAWMPGRKLYGEVSSASNCTDFQSRRLGIKYKTADGTTKYAHTCNGTALASTRALI 401
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 100 FGTGSGTHARFHPCNGTETIAL*AVIRLSCQPCLHRRRLLRRIKF 234
F G+G +ARF P T AL R RR LL+ KF
Sbjct: 14 FVNGTGNNARFVPSTNNSTEALTLSPRAVPSTVSDRRFLLKACKF 58
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 100 FGTGSGTHARFHPCNGTETIAL*AVIRLSCQPCLHRRRLLRRIKF 234
F G+G +ARF P T AL R RR LL+ KF
Sbjct: 14 FVNGTGNNARFVPSTNNSTEALTLSPRAVPSTVSDRRFLLKACKF 58
>AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical
protein Y47D3B.11 protein.
Length = 487
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 157 IAL*AVIRLSCQPCLHRRRLLRRI 228
++L V+++ CQP +HR LR +
Sbjct: 225 VSLLVVVKIRCQPTMHRELWLRAL 248
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 7 LE*WIPGLQA*SLLHSRRVRTAAGCIIMTITFGTGSGTHARFHPCNGTETIAL*AVI 177
+E W+PG + + S T + I + T GT H CNGT + A+I
Sbjct: 345 IEAWMPGRKLYGEVSSASNCTDFQSRRLGIKYKTADGTTKYAHTCNGTALASTRALI 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,338,054
Number of Sequences: 27780
Number of extensions: 174697
Number of successful extensions: 486
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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